<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02073

Description Uncharacterized protein
SequenceMENLSQSSGGQFRPVIPAQPGQAFISSSAQQFQLAGQNISSSNVGVPAGQVQPHQYPQSMPQLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVNPAANAPVFNQQLSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVMAPQPTLAAGLSHAETPAISSVNSSISPTVSGVATSPVPVTPFVSVSNSPSVMVTGSSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEDQKKIQKERVRRIERKNRDEFRKLMEEHIAAGVFTAKTFWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVLEDLENKYHEEKTQIKDVVKAAKITITSSWTFDDFKAAIEESGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLQSLKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFEEHITHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKGRVKKDETDSENVDVSDTHVYREDKKRDKDKDRKHRKRHHSATDDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ
Length985
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-1.070
Instability index56.13
Isoelectric point6.27
Molecular weight112187.98
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02073
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     189.30|      28|      28|     826|     853|       1
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  506-  531 (30.31/11.99)	KMLEES.KELTSS..TRWSKAVSMF...............END.E
  532-  559 (31.93/13.03)	RFKAVE.RSRDRE.DLFESYIVELE...............RKEKE
  799-  825 (34.95/14.98)	QLFEES..EEYRS.IGEESFAKEVF...............EEHIT
  826-  853 (40.32/18.44)	HLQEKA.KEKERK.REEEKAKKEKE...............REEKE
  854-  897 (25.30/ 8.76)	KRKEKErKEKDRE.REKEKGRVKKDetdsenvdvsdthvyREDKK
  898-  922 (26.49/ 9.53)	R....D.KDKDRKhRKRHHSATDDG...............ASDKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.15|      38|      40|     185|     222|       2
---------------------------------------------------------------------------
  129-  161 (40.61/19.42)	.QMHApvSVG......NSQPWLSSASQTTNLVSPIDQANQ
  185-  222 (74.19/40.92)	WQEHA..SADGRRYYYNKKTKQSSWEKPLELMTPLERADA
  226-  261 (66.36/35.91)	WKEFT..APDGRKYYYNKVTKESKWTMPEEL..KLAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.07|      35|      36|      50|      84|       3
---------------------------------------------------------------------------
   18-   48 (37.01/17.37)	.AQPGQaF..ISSSAQQFQLA.GQ....NISSSNVGVPA
   50-   84 (70.18/38.89)	QVQPHQ.Y..PQSMPQLVQRP.GHPSYVTPSSQPIQMPY
   86-  122 (47.87/24.41)	QTRPLT.SvpPQSQ.QNVAAPnNHMHGLGAHGLPLSSPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.28|      36|      38|     319|     354|       4
---------------------------------------------------------------------------
  274-  324 (34.84/22.74)	.SVMAPQPTLAAGlshaeTPAISSvnSS..ISPTVSgvatspvpvTPFVSVSNS
  325-  360 (60.46/45.59)	PSVMVTGSSAITG.....TPIAST..TS..VSGTVS.........SQSVAASGG
  364-  393 (32.98/21.08)	PAVVHANASSVT.......PFESL..ASqdVKNTVD.........GTS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.82|      15|      15|     612|     626|       5
---------------------------------------------------------------------------
  612-  626 (26.00/14.42)	IFQDYIRDLEKEEED
  630-  644 (20.82/10.09)	IQKERVRRIERKNRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      40.44|      10|      38|     432|     441|       6
---------------------------------------------------------------------------
  416-  425 (12.45/ 6.02)	EEKSADDEPL
  432-  441 (14.29/ 8.32)	EAKNAFKALL
  473-  482 (13.70/ 7.57)	ERKQAFHEYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.50|      23|      87|     563|     591|       7
---------------------------------------------------------------------------
  563-  589 (29.42/20.64)	EEHKKNIAEyrkFLESCDyIKVSSQWR
  706-  728 (35.07/ 7.67)	HEEKTQIKD...VVKAAK.ITITSSWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.24|      23|      28|     925|     952|       8
---------------------------------------------------------------------------
  925-  952 (33.00/20.76)	EeskksRKHGSDRKKSRKHAYSPESDSE
  955-  977 (41.24/17.38)	H.....RRHKRDHRDGSRRNHDELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.49|      25|      52|     677|     701|       9
---------------------------------------------------------------------------
  660-  688 (37.48/23.35)	TA.KTF.WRDyclkVKELP.............Q.............................YQAVASNTSGS
  689-  741 (24.57/12.78)	TP.KDL.FED....VLEDL.............EnkyheektqikdvvkaakititsswtfddFKA.AIEESGS
  742-  780 (16.44/ 6.12)	LAvSDInFKL....VYEDLlerakekeekeakR.............................RQRLADDFSG.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02073 with Med35 domain of Kingdom Viridiplantae
Unable to open file!