<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02073

Description Uncharacterized protein
SequenceMENLSQSSGGQFRPVIPAQPGQAFISSSAQQFQLAGQNISSSNVGVPAGQVQPHQYPQSMPQLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVNPAANAPVFNQQLSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVMAPQPTLAAGLSHAETPAISSVNSSISPTVSGVATSPVPVTPFVSVSNSPSVMVTGSSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEDQKKIQKERVRRIERKNRDEFRKLMEEHIAAGVFTAKTFWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVLEDLENKYHEEKTQIKDVVKAAKITITSSWTFDDFKAAIEESGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLQSLKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFEEHITHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKGRVKKDETDSENVDVSDTHVYREDKKRDKDKDRKHRKRHHSATDDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ
Length985
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-1.070
Instability index56.13
Isoelectric point6.27
Molecular weight112187.98
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02073
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     189.30|      28|      28|     826|     853|       1
---------------------------------------------------------------------------
  506-  531 (30.31/11.99)	KMLEES.KELTSS..TRWSKAVSMF...............END.E
  532-  559 (31.93/13.03)	RFKAVE.RSRDRE.DLFESYIVELE...............RKEKE
  799-  825 (34.95/14.98)	QLFEES..EEYRS.IGEESFAKEVF...............EEHIT
  826-  853 (40.32/18.44)	HLQEKA.KEKERK.REEEKAKKEKE...............REEKE
  854-  897 (25.30/ 8.76)	KRKEKErKEKDRE.REKEKGRVKKDetdsenvdvsdthvyREDKK
  898-  922 (26.49/ 9.53)	R....D.KDKDRKhRKRHHSATDDG...............ASDKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.15|      38|      40|     185|     222|       2
---------------------------------------------------------------------------
  129-  161 (40.61/19.42)	.QMHApvSVG......NSQPWLSSASQTTNLVSPIDQANQ
  185-  222 (74.19/40.92)	WQEHA..SADGRRYYYNKKTKQSSWEKPLELMTPLERADA
  226-  261 (66.36/35.91)	WKEFT..APDGRKYYYNKVTKESKWTMPEEL..KLAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.07|      35|      36|      50|      84|       3
---------------------------------------------------------------------------
   18-   48 (37.01/17.37)	.AQPGQaF..ISSSAQQFQLA.GQ....NISSSNVGVPA
   50-   84 (70.18/38.89)	QVQPHQ.Y..PQSMPQLVQRP.GHPSYVTPSSQPIQMPY
   86-  122 (47.87/24.41)	QTRPLT.SvpPQSQ.QNVAAPnNHMHGLGAHGLPLSSPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.28|      36|      38|     319|     354|       4
---------------------------------------------------------------------------
  274-  324 (34.84/22.74)	.SVMAPQPTLAAGlshaeTPAISSvnSS..ISPTVSgvatspvpvTPFVSVSNS
  325-  360 (60.46/45.59)	PSVMVTGSSAITG.....TPIAST..TS..VSGTVS.........SQSVAASGG
  364-  393 (32.98/21.08)	PAVVHANASSVT.......PFESL..ASqdVKNTVD.........GTS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.82|      15|      15|     612|     626|       5
---------------------------------------------------------------------------
  612-  626 (26.00/14.42)	IFQDYIRDLEKEEED
  630-  644 (20.82/10.09)	IQKERVRRIERKNRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      40.44|      10|      38|     432|     441|       6
---------------------------------------------------------------------------
  416-  425 (12.45/ 6.02)	EEKSADDEPL
  432-  441 (14.29/ 8.32)	EAKNAFKALL
  473-  482 (13.70/ 7.57)	ERKQAFHEYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.50|      23|      87|     563|     591|       7
---------------------------------------------------------------------------
  563-  589 (29.42/20.64)	EEHKKNIAEyrkFLESCDyIKVSSQWR
  706-  728 (35.07/ 7.67)	HEEKTQIKD...VVKAAK.ITITSSWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.24|      23|      28|     925|     952|       8
---------------------------------------------------------------------------
  925-  952 (33.00/20.76)	EeskksRKHGSDRKKSRKHAYSPESDSE
  955-  977 (41.24/17.38)	H.....RRHKRDHRDGSRRNHDELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.49|      25|      52|     677|     701|       9
---------------------------------------------------------------------------
  660-  688 (37.48/23.35)	TA.KTF.WRDyclkVKELP.............Q.............................YQAVASNTSGS
  689-  741 (24.57/12.78)	TP.KDL.FED....VLEDL.............EnkyheektqikdvvkaakititsswtfddFKA.AIEESGS
  742-  780 (16.44/ 6.12)	LAvSDInFKL....VYEDLlerakekeekeakR.............................RQRLADDFSG.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02073 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EVFEEHITHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKGRVKKDETDSENVDVSDTHVYREDKKRDKDKDRKHRKRHHSATDDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ
2) FESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNETVL
3) GQNISSSNVGVPAGQVQPHQYPQSMPQLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSPYTF
4) PVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVNPAANAPVFNQQLSSDW
5) TMPEELKLAREQAQKEATQGTQTDISVMAPQPTL
6) VMVTGSSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASS
818
377
36
133
249
327
985
415
124
185
282
373










Molecular Recognition Features






MoRF SequenceStartStop




1) DKDEREESKKSRKH
2) GRRYYYN
3) HDELEDGEL
4) HRKRHHSATDD
5) SDRKKSRKHAY
920
193
970
906
935
933
199
978
916
945