<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02065

Description Uncharacterized protein
SequenceMADKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRSFCGNELTGQKPPTSNVEFSLVTFHTHGSYCGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQPNGGQNQQTMDMQKHCILVAASNPYPLPTPVYRPAVQNLEQHDNVEPGSSQSYAETVAKSFPQCFISLSVICPKQLPKLKAIYTAGKRNPRAADPPIDNVKSPSYLVLISENFVEARAALSRPGITSLPANQSPVKMDISSVVPVTGPPPTTTPSVNGPIINRQPVSVPNGPTATVKVEPNTVTSMTNGSGYPPHMPSVVRAASQGVPSLQTSSPLSSQEMITNNENTQDLKPLVTGVPQPVRSLGPANVSILNNISQARVMSTAALNGGTSIGLPSMGQTPIAMHVSNMISSGMGSSVPAAQNVFSSGQSGMTSINGSSTLSQVAPNSGISSLTSGNNNISGNPNIATSQAVGNLQGSVSVSQSVPGISQGNLAGTQVVQSGIGVSQNVMSNLTQPGVSSGNGTMIPTPGMPQQVQNGMHSLGMNNAAANMPLPQHSAGALQQQAQSKYVKFWEGNLSGQRQGQPVFITRMEGYRSASASDKLAANWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVRYL
Length680
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.05
Grand average of hydropathy-0.141
Instability index45.49
Isoelectric point9.00
Molecular weight71778.83
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02065
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.77|      23|      23|     409|     431|       2
---------------------------------------------------------------------------
  401-  421 (29.00/12.08)	..SNMISSGMGSSVP.AAQNVFSS
  422-  442 (27.85/11.29)	GQSGMTSINGSSTLSqVAPN...S
  508-  528 (33.91/15.46)	TQPG.VSSGNGTMIP..TPGMPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     377.56|     119|     166|      45|     164|       3
---------------------------------------------------------------------------
   45-  131 (132.47/74.18)	.............................................................................PPTSNVEFS..LVTFHTHGSYCGCLVQRTGWT....RDVDIFIQWLSAI.....................PFSGGGFSDAAIAEGLAEALMMFPTQ.PNGGqNQQTMDMQKHCIL
  132-  297 (163.50/88.91)	VAASNPYPLPTP.VYRPAVQNLEQHDNVEPGSSQsyaetvaksfpqcfislsvicpkqlpklkaiytagkrnpraadPPIDNVKSPsyLVLISENFVEARAALSRPGITslpaNQSPVKMDISSVV.....................PVTGPPPTTTPSVNG..PIINRQPVSvPNG..PTATVKVEPNTVT
  299-  383 (81.59/40.07)	MTNGSGYPPHMPsVVRAASQGVPSLQTSSPLSSQ............................................................................................emitnnentqdlkplvtgvpqPVRSLGPANVSILNNISQARVMSTAA.LNGG..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.24|      15|      15|     555|     569|       4
---------------------------------------------------------------------------
  555-  569 (28.17/15.58)	L..QQQAQSKYVKFWEG
  571-  587 (23.07/11.65)	LsgQRQGQPVFITRMEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.10|      18|      36|     444|     466|       5
---------------------------------------------------------------------------
  444-  466 (25.68/22.80)	ISsltsgNNNISGNPN....IATSQAV
  482-  503 (25.42/11.67)	IS.....QGNLAGTQVvqsgIGVSQNV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02065 with Med25 domain of Kingdom Viridiplantae
Unable to open file!