<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02063

Description Uncharacterized protein
SequenceMANNPQYSGLQPLRPPVVGPMDQGRSFVPPMTAQFRPAVPGPHSQQFVPLPSPHFQPLGQGVPLMNAGMPPPPPQPQQSQFSQPVAHLPLRPCEPVHGTLPPQTIPLPVAQQNRQYTPELQQAQPLTQPAAIGMPGPGGSGTSLSASYSYGPPQNYNTTIVQPVPQSHAPVVSSGGQLGSLVSVTPLNHSREQPYATSSVTSAANVLLMPSATAASSEWREHTSPDGRRYYYNKKTKISSWEKPFELMTAIERADASTNWKEFTSPEGRKYYYNKMTKESKWIIPEELKLARERVEKSSTLGTEKEPVPLELPSVSTLEAPSTTADTQTTAKELASNALSVAAADLQTDKDASPGAVSSVETNGGVQSPVNIVPSSCAISENDDSAGVVEVTTVEPRNDLNQSSAQDTENLTDGVSAQELEETKKDTSDEKVEFTLEERAIDQDTSAYPNKQEAKNAFKALLESANVGSDWTWDRAMRIIINDKRYGALKTLGERKQAFNEFLGQRKKQEVEERRTKQKKAREEFRKMLEESTELTSSMRWGKAESIFENDERFQAVERDRDRRDLFESFLEELKNKERAKAQEERSRNILEYRKFLESCDFIKASSQWRKVQDRLEVDERCSRLEKIDRLEIFQEYLRDLEKEEEEQRKIQKEELRKAERKNRDEFRKMMEEHIAAGLLTPKIHWRDYCMKVKELPAYLAVAANTSGSTPKDLFEDVAEELQKQYRDDKTRIKDAVKLRKVAISLSWTLDDFKAAISKDIGNPPVPDTNLKLVFDELLERAREKEEREAKKRKRLGDDFFNLLCSFKEISVYSNWEDSKSSFEGSQEYSAIEDEKLCKEIFEEYIAQLKEHTKENENKRKEEKARKEREREERERRKEKHKKGEREKEDHFKKDGVDNENVDVSDTLELKENRRLDKERSKKQRKRRYSDEEYSDEDEAGHDRSKKSQSHKDRKKSRRHGSAHESDGESRHRRHKRDHRNGSYKNLDHEELEDGECGDDGASR
Length1004
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-1.099
Instability index56.77
Isoelectric point5.98
Molecular weight114907.46
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02063
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.47|      38|      38|     216|     253|       1
---------------------------------------------------------------------------
  216-  253 (77.31/54.60)	SSEWREHTSPDGRRYYYNKKTKISSWEKPFELMTAIER
  257-  294 (76.16/53.67)	STNWKEFTSPEGRKYYYNKMTKESKWIIPEELKLARER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     446.10|      65|      65|     443|     507|       2
---------------------------------------------------------------------------
  443-  504 (83.30/49.08)	.....Q.DTSAYPNKQ.EAKNAFKALL.ESAN.VGSDW.T....W.DRAMRIIINDKRY...GALKTLGE.RKQAFNEFLG
  505-  572 (84.66/50.01)	QRK.kQ.EVEERRTKQkKAREEFRKMLeESTE.LTSSM.R....W.GKAESIFENDERF...QAVERDRD.RRDLFESFLE
  573-  639 (75.92/44.02)	ELKnkE.RAKAQEERS.RNILEYRKFL.ESCDfIKASS.Q....W.RKVQDRLEVDERC...SRLEKI.D.RLEIFQEYLR
  648-  720 (63.15/35.27)	QRK.iQ.KEELRKAER.KNRDEFRKMM.EEHI.AAGLL.TpkihWrDYCMK.VKELPAYlavAA.NTSGStPKDLFEDVAE
  721-  779 (61.02/33.81)	E.....lQKQYRDDKT.RIKDAVK..L.RKVA.ISLSW.T....L.DDFKAAISKDIGN...PPVPD.TN.LKLVFDELL.
  780-  847 (78.03/45.46)	ERAreK.EEREAKKRK.RLGDDFFNLL.CSFK.EISVYsN....W.EDSKSSFEGSQEY...SAIEDEKL.CKEIFEEYIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     180.99|      31|      31|      28|      58|       3
---------------------------------------------------------------------------
   28-   58 (61.41/40.54)	VPPMTAQFRPAVPGPHSQ...QFVPLPSPHFQPL
   62-   90 (52.16/33.18)	VPLMNAGMPPPPPQPQQS...QF.SQPVAHL.PL
  100-  126 (35.80/20.17)	LPPQT......IPLPVAQqnrQYTP.ELQQAQPL
  152-  177 (31.61/16.83)	.PPQ..NYNTTIVQPVPQ...SHAPVVSSGGQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.29|      15|      15|     859|     873|       4
---------------------------------------------------------------------------
  864-  880 (18.67/ 7.72)	KARKEREREEreRRKEK
  881-  895 (22.62/11.19)	HKKGEREKED..HFKKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.68|      21|      26|     915|     938|       5
---------------------------------------------------------------------------
  923-  946 (31.18/26.31)	KQRK..RRYSDEEYSDEDeagHDRSK
  952-  972 (26.85/14.33)	KDRKksRRHGSAHESD.....GESRH
  973-  988 (20.65/ 7.95)	RRHK..RDHRNGSYKNLD........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.26|      13|      42|     301|     317|       6
---------------------------------------------------------------------------
  301-  314 (17.97/ 7.72)	LGTEKEPVPLeLPS
  363-  375 (18.30/10.56)	NGGVQSPVNI.VPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.15|      13|      18|     325|     338|       7
---------------------------------------------------------------------------
  325-  338 (17.19/16.95)	ADTQTTaKELASNA
  344-  356 (22.97/16.82)	ADLQTD.KDASPGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.28|      19|      42|     381|     399|       8
---------------------------------------------------------------------------
  381-  399 (31.51/22.70)	ENDDSAGVVEVTTVEPRND
  424-  442 (27.78/19.02)	KKDTSDEKVEFTLEERAID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02063 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ENDDSAGVVEVTTVEPRNDLNQSSAQDTENLTDGVSAQELEETKKDTSDEKVEFTLEERAIDQDTSAYPNKQEAK
2) ERVEKSSTLGTEKEPVPLELPSVSTLEAPSTTADTQTTAKELASNALSVAAADLQTDKDASPGAVSSVETNGGVQSPVNIVPSSCAI
3) LKEHTKENENKRKEEKARKEREREERERRKEKHKKGEREKEDHFKKDGVDNENVDVSDTLELKENRRLDKERSKKQRKRRYSDEEYSDEDEAGHDRSKKSQSHKDRKKSRRHGSAHESDGESRHRRHKRDHRNGSYKNLDHEELEDGECGDDGASR
4) MANNPQYSGLQPLRPPVVGPMDQGRSFVPPMTAQFRPAVPGPHSQQFVPLPSPHFQPLGQGVPLMNAGMPPPPPQPQQSQFSQPVAHLPLRPCEPVHGTLPPQTIPLPVAQQNRQYTPELQQAQPLTQPAAIGMPGPGGSGTSLSASYSYGP
5) QNYNTTIVQPVPQSHAPVVSSGGQLGSLVSVTPLNHSREQPYA
381
293
849
1
154
455
379
1004
152
196










Molecular Recognition Features






MoRF SequenceStartStop




1) DHEELEDGE
988
996