<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02061

Description Uncharacterized protein
SequenceMDDRSIGMFWVVSYTMAQPACETVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQAVPSIALAETYTRLLLLAPHSLFRSHFNHLAQRNPSLLSRPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISALKGKRGDHRVFRLAENLCMNLIFSLRDFFFVKREGKGPTEFTETLNRLAVVTLAILIKTRGIADADHLLYLQTMLEQTMATSQHTWSEKTLRYFPPVLREVLIGRIDKRGVAIQAWQQAETTVINQCNQLLSPSADPTYVMTYISHSFPQHKQYLCAGAWILMQGHPESINCTTLARVLREFSPEEVTANIYTMVDVLLHHIQIEPQHGHSTQDILLKVCANLSFFVWTQELLPLDILLLAFIDRDDDPNALRIVISLLDRQELQQRVKLYCISRGSPEHWLHSVVFKRNELQKALGNHLSWKDRYPVFFDDIAARLLPIIPLIVYRLIENDAVDQADRLLALYSPFLAYHPLRFTFVRDILAYFYSHLPNKLIVRILYVLDISKIPFSESFPTHISSPGPVMCPPMDYFATLLLGLVNNVIPSLQTSKSGTVGDNSSSSMRPSHNKSPATNPPVATSAPESQKAFYQIQDPGTYTQLVLETAVIELLSLPVSAGQIVSSLVQIVVNIQPTLIQSSNNLHVAPSSMGQGSAIPTSPSGGSTDSLNAGRSNTSVSGINTPNFVSRSGYTCQQLSSLMIQACGLLLAQLPQEFHGQLYLEASRIIKETWWLSDATRSLGELNSAVGYSLMDPTWAAQDNTSTAIGNTVALLHSLFSNLPQEWLEGAHVIIKHLRPVTSVAMLRIVFRIIGPLLPKLANAHSLFCKTLSSLLSVMVDVFGKNSQTSIPVEAAEIADLIDFLHHVVHYEGQGGPVVASSKPRQEVLAIIGRALENLRPDVQHLLSHLKPDTTTSIYAATHPKLVQNPA
Length967
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.08
Grand average of hydropathy0.063
Instability index41.18
Isoelectric point7.04
Molecular weight107664.09
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02061
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.92|      18|      21|     475|     492|       1
---------------------------------------------------------------------------
  475-  492 (31.36/20.23)	DIAARLLPII.PLIVYRLI
  498-  516 (26.56/15.88)	DQADRLLALYsPFLAYHPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.57|      41|     324|     421|     465|       2
---------------------------------------------------------------------------
  421-  461 (72.71/46.91)	LLDRQELQQRVKLY.CISR.GSPEHWLHSVVFKRNELQKAL.GN
  752-  787 (36.83/20.73)	....QEFHG..QLYlEASRiIKETWWLSDATRSLGELNSAV.G.
  790-  827 (57.03/34.03)	LMDPTWAAQDNTST.AI...GNTVALLHS.LFS.NLPQEWLeGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.32|      32|     708|     125|     232|       3
---------------------------------------------------------------------------
   68-   99 (53.91/99.09)	NLCSKLAYQMEESLF.SGQAVPSIALAETYTRL
  179-  211 (52.41/44.58)	NLCMNLIFSLRDFFFvKREGKGPTEFTETLNRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.83|      26|     323|     604|     635|       4
---------------------------------------------------------------------------
  604-  635 (43.22/35.79)	MRP......SHNKSPATNPPVATSAPEsqkafyQIQDP
  935-  966 (41.61/22.21)	LRPdvqhllSHLKPDTTTSIYAATHPK......LVQNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.25|      25|     539|     347|     372|       8
---------------------------------------------------------------------------
  347-  372 (42.52/29.79)	PEEvTANIYTMVDVLLHHIQIEPQHG
  888-  912 (45.73/27.77)	PVE.AAEIADLIDFLHHVVHYEGQGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.22|      22|     325|     517|     541|      11
---------------------------------------------------------------------------
  248-  269 (40.68/19.54)	TWSEKTLRYFPPVLREVLIGRI
  519-  540 (39.54/20.12)	TFVRDILAYFYSHLPNKLIVRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02061 with Med23 domain of Kingdom Viridiplantae
Unable to open file!