<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02049

Description Uncharacterized protein
SequenceMELLNLLHSPHFSSLDALHGFYSSSTLPTPMLKPRLCGVVEEASGGDSGDFVYVAVGKSVEKSTSLLRWTFRCFGDKEIRLLHVHQLSSVIPTLLGKLPASQANTDVVAAYRKKEWGQTSQLLENYLGYCHRAKVKAGIVMMEAEQVQIGIVDLVNKHKVRKLVMGTMADSCVRMKVKKSSSKADYAARNIPLPCEIWFVDKGNHIWTREAVEGSCSASPSLLRELAITKENCSQSSLVDNSHSFNQQYSHSSSANGIIEGFNCIDKEPFHVEGVMSSSLDIHFTYPLRISSSSASTSSDSGYSSVEGREPTSSDSKVEERGLNGELKDAILETEASRNEAIAMHLICRKMEQEAAESIKKFKVFKCVNEHEIDLRRETEELLRTIIEKKQTLSEERTEIHEELESTMKTLALLDSQAQEVNQKHEEATAELRNIQASIAALKKEKQTMQSQKMNALNWLSQWKSQEASLENYNASIRVMEHQTQLIEFTFLELQMATCDFSESFKISHGGYGCLYKGEMLGKTVAIRKLHPHYILGPAEFREEVEVLGKLQHPHLVTLLGVCTEAWSLIYEYLPHGNLQSHLFQKGNTPPLTWKTRARIIAEIGSALCFLHSSKPEKIVHGDLKPENILLDSEFISKICDFGIYRLVSEETLYCPSFRRSTEPKGAFSHTDPECQRDGVLTPKSDIYSFGLIILQLLSGKPIVGLVIELRKAISFGRLESVLDLSAGEWPIDVARRLVDIGLQCCELKGSDRPELTPTIVRELKQLQNFEERPVPSYFLCPILQEIMQDPQVAADGFTYEGEAIREWFNNGRETSPMTNLKLSHLHLTPNHAVRLAIQDWLCRV
Length845
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.295
Instability index43.95
Isoelectric point6.05
Molecular weight95030.51
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.26|      15|      16|     442|     456|       2
---------------------------------------------------------------------------
  424-  437 (16.94/ 9.00)	.KHEE.ATAELRNIQA
  442-  456 (24.42/16.34)	LKKEK.QTMQSQKMNA
  460-  475 (20.89/12.87)	LSQWKsQEASLENYNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.43|       9|      16|     332|     342|       3
---------------------------------------------------------------------------
  332-  342 ( 9.79/13.30)	LETEASrnEAI
  351-  359 (15.65/10.16)	MEQEAA..ESI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     258.73|      88|     139|     499|     617|       7
---------------------------------------------------------------------------
  499-  617 (133.16/126.24)	CDFS............ESFK........ISHGGYGCLYKGemlgktvairklhphyILGPaefREEVE.....VLGKLQHPHLVtllGVCTEAWSLIyeylPHGNLQSHL.FQKGNtppltWKTR.ARIIAEIGSALCFLHSS.KPE
  640-  755 (125.57/67.55)	CDFGiyrlvseetlycPSFRrstepkgaFSHTDPECQRDG................VLTP...KSDIYsfgliILQLLSGKPIV...GLVIELRKAI....SFGRLESVLdLSAGE.....WPIDvARRLVDIGLQCCELKGSdRPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.44|      14|      17|     289|     302|       8
---------------------------------------------------------------------------
  289-  302 (22.49/15.61)	RISSSSASTSSDSG
  309-  322 (23.95/17.16)	REPTSSDSKVEERG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02049 with Med32 domain of Kingdom Viridiplantae
Unable to open file!