<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02047

Description Uncharacterized protein
SequenceMSSASTVSQSVSLPAPPTSNSAANGSSIPNLIPSTSPVPPAPSFHIHQLPSVAPMVPGPPGMSPSMPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVSPPHAMWFQPPQLGAMPRPPFLPYSTSYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVASGISVPSGHGNQLIGNTLIQTDSNHPELDSHKHAQGVGHSENISLNKHSEDWTAHKTEAGIIYYYNALTGESTYEKPSGFRGEAENLMAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVSELRQQNDEKTKELSAPLPNNNASTDLGTSSTSINTPAINTGGREATPLRTVGISGSSSALDLIKKKLQDSGTPVASSPISAPTVAQSDVNLPRDADATVKALQTENKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEALDRKDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDININSRWFRVKDSLREDPRYRSVKHEEREMLFNEYISELKAAEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKLFREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVPRKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
Length845
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.810
Instability index51.33
Isoelectric point8.46
Molecular weight94066.36
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     147.99|      21|      21|     119|     139|       1
---------------------------------------------------------------------------
   39-   62 (23.63/ 7.64)	.PPAPSFhihQL...PSV.AP..MvP..GPPG.M
   71-   92 (29.30/11.21)	TGPAVLF....P...PTD.SAstI.P..GPNM.H
   97-  118 (22.52/ 6.94)	PIHPS.....AR...PQIcGS..Y.PslTPVV.S
  119-  139 (46.18/21.85)	PPHAMWF...QP...PQL.GA..M.P..RPPF.L
  140-  163 (26.36/ 9.35)	PYSTSYH...GPlpfPAR.G...M.P..LPSVpL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.08|      16|      16|     640|     655|       2
---------------------------------------------------------------------------
  640-  655 (26.27/15.75)	EEKQRESKARKEEQEK
  657-  672 (28.81/17.99)	KEREREWRKRKEREEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.99|      53|      54|     211|     263|       3
---------------------------------------------------------------------------
  211-  254 (71.33/49.83)	.......................AQGVG.HSENI...SL.NKHSEDWTAHKTEAGIIYYYNALTGESTYEKP
  255-  306 (77.19/54.58)	SGFRGEAEN............lmAQ.....ATSV...SMsNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIP
  310-  363 (27.47/14.31)	SELRQQNDEktkelsaplpnnnaSTDLGtSSTSIntpAI.NTGGREATPLRT.VGI................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.59|      45|      54|     512|     556|       4
---------------------------------------------------------------------------
  375-  426 (32.77/14.58)	..KKLQDSgtpvASSPISA.PTVAQSdV.....................NLPRDADATVKAL..................qtENKD...........kPKdANAD
  427-  517 (35.69/16.51)	GNVSDSSS....DSEDVDSgPTNEQL.IiqfkemlkergvapfskwdkeLPKIVFDPRFKAIpsysarrslfehyvktraeeERKE........kraaQK.AAIE
  518-  574 (65.82/36.43)	GFKQLLDS....ASEDIDH.TTSYQT.F.....................KKKWGNDSRFEAL....................DRKDrenllnervlclKK.AAVE
  586-  625 (54.31/28.82)	SFKSMLQ.....EREDINI.NSRWFR.V.....................KDSLREDPRYRSV....................KHEE............RE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.43|      43|     111|     680|     724|       7
---------------------------------------------------------------------------
  680-  724 (62.08/56.98)	KVRKKEAVASFQALLVESIKdPQASWTESKVKLEKDPQGRASnTD
  791-  833 (69.35/51.92)	KVPRKEREALWRRYADDTVR.KQKLANDHKGEKYNDYKNRAT.TD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      12|      21|     167|     178|       8
---------------------------------------------------------------------------
  167-  178 (22.47/14.52)	QPPGVTPVQVAS
  189-  200 (19.97/12.03)	QLIGNTLIQTDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02047 with Med35 domain of Kingdom Viridiplantae
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