<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02047

Description Uncharacterized protein
SequenceMSSASTVSQSVSLPAPPTSNSAANGSSIPNLIPSTSPVPPAPSFHIHQLPSVAPMVPGPPGMSPSMPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVSPPHAMWFQPPQLGAMPRPPFLPYSTSYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVASGISVPSGHGNQLIGNTLIQTDSNHPELDSHKHAQGVGHSENISLNKHSEDWTAHKTEAGIIYYYNALTGESTYEKPSGFRGEAENLMAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVSELRQQNDEKTKELSAPLPNNNASTDLGTSSTSINTPAINTGGREATPLRTVGISGSSSALDLIKKKLQDSGTPVASSPISAPTVAQSDVNLPRDADATVKALQTENKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEALDRKDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDININSRWFRVKDSLREDPRYRSVKHEEREMLFNEYISELKAAEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKLFREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVPRKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
Length845
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.810
Instability index51.33
Isoelectric point8.46
Molecular weight94066.36
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     147.99|      21|      21|     119|     139|       1
---------------------------------------------------------------------------
   39-   62 (23.63/ 7.64)	.PPAPSFhihQL...PSV.AP..MvP..GPPG.M
   71-   92 (29.30/11.21)	TGPAVLF....P...PTD.SAstI.P..GPNM.H
   97-  118 (22.52/ 6.94)	PIHPS.....AR...PQIcGS..Y.PslTPVV.S
  119-  139 (46.18/21.85)	PPHAMWF...QP...PQL.GA..M.P..RPPF.L
  140-  163 (26.36/ 9.35)	PYSTSYH...GPlpfPAR.G...M.P..LPSVpL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.08|      16|      16|     640|     655|       2
---------------------------------------------------------------------------
  640-  655 (26.27/15.75)	EEKQRESKARKEEQEK
  657-  672 (28.81/17.99)	KEREREWRKRKEREEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.99|      53|      54|     211|     263|       3
---------------------------------------------------------------------------
  211-  254 (71.33/49.83)	.......................AQGVG.HSENI...SL.NKHSEDWTAHKTEAGIIYYYNALTGESTYEKP
  255-  306 (77.19/54.58)	SGFRGEAEN............lmAQ.....ATSV...SMsNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIP
  310-  363 (27.47/14.31)	SELRQQNDEktkelsaplpnnnaSTDLGtSSTSIntpAI.NTGGREATPLRT.VGI................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.59|      45|      54|     512|     556|       4
---------------------------------------------------------------------------
  375-  426 (32.77/14.58)	..KKLQDSgtpvASSPISA.PTVAQSdV.....................NLPRDADATVKAL..................qtENKD...........kPKdANAD
  427-  517 (35.69/16.51)	GNVSDSSS....DSEDVDSgPTNEQL.IiqfkemlkergvapfskwdkeLPKIVFDPRFKAIpsysarrslfehyvktraeeERKE........kraaQK.AAIE
  518-  574 (65.82/36.43)	GFKQLLDS....ASEDIDH.TTSYQT.F.....................KKKWGNDSRFEAL....................DRKDrenllnervlclKK.AAVE
  586-  625 (54.31/28.82)	SFKSMLQ.....EREDINI.NSRWFR.V.....................KDSLREDPRYRSV....................KHEE............RE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.43|      43|     111|     680|     724|       7
---------------------------------------------------------------------------
  680-  724 (62.08/56.98)	KVRKKEAVASFQALLVESIKdPQASWTESKVKLEKDPQGRASnTD
  791-  833 (69.35/51.92)	KVPRKEREALWRRYADDTVR.KQKLANDHKGEKYNDYKNRAT.TD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      12|      21|     167|     178|       8
---------------------------------------------------------------------------
  167-  178 (22.47/14.52)	QPPGVTPVQVAS
  189-  200 (19.97/12.03)	QLIGNTLIQTDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02047 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEEKQRESKARKEEQEKLKEREREWRKRKE
2) GNQLIGNTLIQTDSNHPELDSHKHAQGVGHSENISLNKHSED
3) KKKLQDSGTPVASSPISAPTVAQSDVNLPRDADATVKALQTENKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLII
4) KQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
5) MSSASTVSQSVSLPAPPTSNSAANGSSIPNLIPSTSP
6) PARGMPLPSVPLPDPQPPGVTPVQVASGISVPS
7) PSFHIHQLPSVAPMVPGPPGMSPSMPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPS
8) QIPNEVSELRQQNDEKTKELSAPLPNNNASTDLGTSSTSINTPAINTGGREATPLRTVGI
639
187
374
811
1
152
42
304
668
228
450
845
37
184
101
363










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRILK
2) ALWRRYAD
3) LIKKKL
4) RYGKV
5) TVRKQKLANDHKGEKYNDYK
779
799
372
788
808
784
806
377
792
827