<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02046

Description Uncharacterized protein
SequenceMQPPVINQGPSISVPQSSNQPQPRQQILQQNIPNNIVPQSSSSLSSAVPPVAGLASSSMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNQSVMQPSMLQSSLSNLQQNQQSPIQQSTQSMLQQPQQPILRQQPQSQQHAVIHQQPTMSQQTNLPSQQQQQLINQQTNSSNMQQSPLIGQQTSVGDMQQQLPQQSRSHGQQSNLSNMQSPPSQQHMAQQNNLSSLQQQQLGPQSNVSGLQQMHGTQSGNSNMQSNQHSMHLLQQNKVQMQQQPPQNTSNLLSTQGQQGQLQSSQQMMSQISLQSTQVQQQVPLQQPQQQQANAMSHELQQRIPVGGQAPGSLLQSQNVMDQQKQLYHSQRALPETSSTSLDSTAQTGQANGGDWQEEIYQKIKGMRELYFYELKEMYQKILPKVHQYDSLPQQPKLEQLNKLKTFKGILERLLTFLQLPKNNIAIELKDKIGQYEKQIVSFLNSNKPSRTRAPPTLQPGQHPTIQPIQQSQSQMTPLQSPENQINPQLHSANMQGSVAPVQQNNMSSMQHNSLQTFSGSAAQQNMTIPMQPGSSLESGQGNSLSSLQQVAAGSLQQNPANSSQRSNNGSLPSQNVVNTLQPNMNSLQSNPNMLQHQHLKQQDPQQLLQSQQLKQIQQRQLKQQLQHQQQQQQQPATATATATTVTSATVTATSTRKATVTHTNTGTRNVTP
Length702
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.02
Grand average of hydropathy-0.942
Instability index89.37
Isoelectric point9.90
Molecular weight77342.97
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02046
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.72|      42|      42|     189|     230|       1
---------------------------------------------------------------------------
  167-  201 (49.82/ 7.65)	QTNSSNMQQSP......LIGQQTSVGD.............mQQQLPQQSRSHGQ
  202-  246 (68.79/14.29)	QSNLSNMQSPPS...QQHMAQQNNLSSLQQQQ......lgpQSNVSGLQQMHGT
  611-  664 (48.10/ 7.05)	QPNMNSLQSNPNmlqHQHLKQQDPQQLLQSQQlkqiqqrqlKQQLQHQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     306.37|      44|      44|     247|     290|       2
---------------------------------------------------------------------------
   11-   53 (42.77/ 6.77)	SISVPQS.SNQP.QprQQILQQN.IP.N...N.IV.PQSSSS.LSSAVPPVAG
  101-  134 (43.27/ 6.96)	QSSLSNLQQNQQ.S..P..IQQSTQSML...Q.QP.QQP....ILRQQ.....
  247-  290 (81.57/21.91)	QSGNSNMQSNQH.S..MHLLQQNKVQMQ...Q.QP.PQNTSN.LLSTQGQQGQ
  292-  332 (49.53/ 9.40)	QSSQ.QMMS.QI.S.....LQSTQVQQQvplQ.QP.QQQQAN.AMSHELQQ.R
  338-  379 (45.09/ 7.67)	QAPGSLLQS.QN.V..MD..QQKQLYHS...Q.RAlPETSST.SLDSTAQTGQ
  481-  527 (44.14/ 7.30)	TRAPPTLQPGQHpT..IQPIQQSQSQMT...PlQS.PENQINpQLHSANMQGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.30|      22|      65|      67|      92|       3
---------------------------------------------------------------------------
   61-   90 (30.34/15.29)	NM.vgqnPNIQNvsgvPQNSGGNAMGQGVPS
  577-  603 (28.96/ 8.10)	LQqvaagSLQQN....PANSSQRSNNGSLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.44|      16|      19|     533|     548|       4
---------------------------------------------------------------------------
  538-  557 (24.15/ 9.30)	SMQH.NSLQTFSgsaaQQNMT
  559-  575 (23.29/ 8.66)	PMQPgSSLESGQ....GNSLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.66|      19|      37|     386|     414|       6
---------------------------------------------------------------------------
  386-  404 (34.70/14.16)	QEEIYQ..KIKGM.....RELYFYEL
  424-  449 (19.96/18.23)	QPKLEQlnKLKTFkgileRLLTFLQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02046 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLYHSQRALPETSSTSLDSTAQTGQANGGD
2) LNSNKPSRTRAPPTLQPGQHPTIQPIQQSQSQMTPLQSPENQINPQLHSANMQGSVAPVQQNNMSSMQHNSLQTFSGSAAQQNMTIPMQPGSSLESGQGNSLSSLQQVAAGSLQQNPANSSQRSNNGSLPSQNVVNTLQPNMNSLQSNPNMLQHQHLKQQDPQQLLQSQQLKQIQQRQLKQQLQHQQQQQQQPATATATATTVTSATVTATSTRKATVTHTNTGTRNVTP
3) MQPPVINQGPSISVPQSSNQPQPRQQILQQNIPNNIVPQSSSSLSSAVPPVAGLASSSMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNQSVMQPSMLQSSLSNLQQNQQSPIQQSTQSMLQQPQQPILRQQPQSQQHAVIHQQPTMSQQTNLPSQQQQQLINQQTNSSNMQQSPLIGQQTSVGDMQQQLPQQSRSHGQQSNLSNMQSPPSQQHMAQQNNLSSLQQQQLGPQSNVSGLQQMHGTQSGNSNMQSNQHSMHLLQQNKVQMQQQPPQNTSNLLSTQGQQGQLQSSQQMMSQISLQSTQVQQQVPLQQPQQQQANAMSHELQQRIPVGGQAPGSLLQSQNVMD
354
473
1
384
702
351










Molecular Recognition Features






MoRF SequenceStartStop




NANANA