<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02044

Description Uncharacterized protein
SequenceMRQGLAAKPGMFQHLPATQRAAYTHQQMKPGTSFPISPPIFQAASPQVAQNSSPQVDQQSLLSSITKTGTPLQSASSPFVVPSPSTPMAPSPMPGESEKPTSGVSAHTNAGNAGQQTSVSGTQAQSLAIGTPGISASPLLAECGTDGPYANVLPTVSGKSSFTEQPLERLIKAVKSMSPKALSASVNGIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFSHDGPNGTKKMRRHTSAMPLNVVSSAGSVNDVFKPLTGSETSDLESTATSSAKRPRVEANHVLLEEIREINQRLIDTVVVISDEVVDPSALAAASDGSEGTVVKCSFSAVALSPSLKSQYTSAQMSPIQPLRLLVPTNYPTCSPILLDKFSVEVSKEYEDLSIKAKSRFSISLRNLSQPMSLADIARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Length452
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.04
Grand average of hydropathy-0.188
Instability index48.26
Isoelectric point8.60
Molecular weight47252.86
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02044
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.58|      15|      16|     176|     191|       1
---------------------------------------------------------------------------
  135-  148 (22.14/ 9.71)	SASP..LLAECGTDGP
  176-  191 (22.60/14.09)	SMSPKaLSASVNGIGS
  194-  208 (23.85/10.96)	SMIDR.IAGSAPGNGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.55|      35|      51|      30|      74|       2
---------------------------------------------------------------------------
   30-   71 (58.96/36.16)	PGTSFPISPPIFQAAS..P.......QVAQNSSPQvdqqsllSSITKT.......GTP
   82-  132 (49.59/16.57)	PSPSTPMAPSPMPGESekPtsgvsahTNAGNAGQQ.......TSVSGTqaqslaiGTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.95|      14|      16|     355|     368|       3
---------------------------------------------------------------------------
  355-  368 (25.58/19.97)	SPI..QPLRLLVPTNY
  372-  387 (19.37/13.15)	SPIllDKFSVEVSKEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.08|      38|     173|     214|     253|       4
---------------------------------------------------------------------------
  214-  253 (63.01/45.87)	EDLVAMTKCR..LQARNFSHdgPNGTKKMRRHTSAMPLNVVS
  388-  427 (59.07/36.42)	EDLSIKAKSRfsISLRNLSQ..PMSLADIARTWDVCARAVVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02044 with Med15 domain of Kingdom Viridiplantae
Unable to open file!