<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02021
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | AMDLAYVCEWEKKPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEEKDLTHMVHIIDTEHPWDVYSVNSGHTEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWENTVGSMVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFYGSSSQRSVDEQAIKRQRTAGPLVHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREENHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLIGHTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRRMPLSYS |
Length | 831 |
Position | Tail |
Organism | Charadrius vociferus (Killdeer) (Aegialitis vocifera) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Charadriiformes> Charadriidae> Charadrius.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.002 |
Instability index | 46.03 |
Isoelectric point | 8.04 |
Molecular weight | 92907.04 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP02021
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.61| 21| 97| 317| 339| 1
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317- 337 (37.73/22.14) PVVGDKQPMILKWRILSATND
343- 363 (33.89/13.84) AVALPKLPISLTNTDLKVAND
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 412.57| 122| 135| 454| 588| 2
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406- 453 (56.22/24.50) ...................................................EQAIK....RQRTAGPLVHFKAMQLSWTSLALAGI.DSHGKLSMLRISPS.............................................MGH
454- 588 (177.09/133.99) VLDMNmSLRHLLFLLEYcmvTGyDWWDILLHVQPNmvQ.NLVEKLHeEYMRQNAAL....QQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLL.....RPHfLNTPDkspgDRLTEIC....SKITDIDIDKVMIN
595- 725 (179.26/99.25) VLEMT.TLQSLQQLIQW...VG.DFVLYLLASLPN..QgSPVRPGH.SFLRDGASLgmfrELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRL.....LTKLWlccreENH.ITEPD....DTLIDECcllpSQLLIPNIDWLPIN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.98| 14| 17| 736| 751| 4
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736- 751 (22.14/23.00) QLVrlQFGKAPGL..IGH
756- 771 (22.85/15.39) QFD..AFVRAPGQpkIDH
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