<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01983

Description F-box-like/WD repeat-containing protein TBL1X (Fragment)
SequenceSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSV
Length320
PositionTail
OrganismTinamus guttatus (White-throated tinamou)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Palaeognathae> Tinamiformes> Tinamidae> Tinamus.
Aromaticity0.09
Grand average of hydropathy-0.398
Instability index28.96
Isoelectric point6.08
Molecular weight34977.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01983
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     381.72|      40|      40|     135|     174|       1
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   17-   50 (38.11/20.99)	...SGSTQLVLRHCirEG.GHDVP....S....NKDV...........TSLDWNSDG
   53-   91 (59.95/37.42)	L.ATGSYDGFARI...WT.EDGNLA..STLGQHKGPI...........FALKWNKKG
   93-  133 (31.86/16.29)	Y...........IL..SA.GVDKTT..IIWDAHTGEAkqqfpfhsapaLDVDWQNNT
  135-  174 (71.38/46.02)	F.ASCSTDMCIHVC..RL.GCDRPV..KTFQGHTNEV...........NAIKWDPSG
  177-  216 (69.26/44.43)	L.ASCSDDMTLKIW..SM.KQDTCV..HDLQAHSKEI...........YTIKWSPTG
  228-  267 (48.04/28.46)	L.ASASFDSTV.....RLwDVDRGVciHTLTKHQEPV...........YSVAFSPDG
  269-  308 (63.11/39.80)	YlASGSFDKCVHIW..NT.QSGTLV..HSYRG.TGGI...........FEVCWNARG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01983 with Med16 domain of Kingdom Metazoa
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