<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01942

Description "Transcription elongation factor A (SII), 3"
SequenceMTREEDLIRIAKKLDKMVSRNNTEGAIDLLKELKGFNMTLKLLQETRIGMSVNNIRKHCRDEEVISLAKVLIKEWKRLLDSGNSHSEKVDELKNGLDARKPAAATNSSSSEPQSRKDSSELKPSQSAKGHCTDSKSVRRESTDSKRSSSPPAKKISSERRESLGSKPLGQPQRKPSTDSLERKGKTETPRTPTTPTSPLSPSFSSPGGPLSPHLATGDSVRDKCIEMLAAALRTDNDYKDFGANCDGMAAEIEDHILCSHLNTAGSYFTNWW
Length272
PositionUnknown
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.03
Grand average of hydropathy-0.875
Instability index62.36
Isoelectric point9.11
Molecular weight30008.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01942
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.48|      19|      20|     138|     156|       1
---------------------------------------------------------------------------
   99-  118 (24.36/10.30)	RKPAAATNSSSSePQSRKDS
  138-  156 (32.19/15.82)	RRESTDSKRSSS.PPAKKIS
  159-  176 (29.67/14.04)	RRESLGSK.PLG.QPQRKPS
  182-  200 (29.26/13.75)	RKGKTETPRTPT.TPTSPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.61|      32|      37|       9|      40|       2
---------------------------------------------------------------------------
    9-   40 (51.33/37.52)	RIAKKLDKMVSRNNTEGAIDLLKEL.KGFNMTL
   47-   79 (49.28/35.75)	RIGMSVNNIRKHCRDEEVISLAKVLiKEWKRLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01942 with Med26 domain of Kingdom Metazoa
Unable to open file!