<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01941

Description Mediator complex subunit 23
SequenceMETQLQSIFEDVVKTEMIEEAFAGMFMDTPENERTKLISCLGAFRQYWGTLQQDSHEQCVQWIVRFIHSQHSPKRISFLYDCLAMAVETSLLPPRMVCVALISSESLEWERTRLWALTFKLIRKIIGGVDYKGVRDLLKAVLDKIQTIPITVSSAIVQQLLAAREVVEYILDRNACLLPAYFAVTEIRKLYPEGHLSHWLLGSLISDFVDSFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPTTLRFPLRGMLPYDKDLFEPQTGLLRYVLEQPYSREMVCNMLGLNKQQKQRCLVLEEQLVDLVVYAMERSETEEHFDADIGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDISKPQSTHSFAMTCIWIHLNRKAQNDNSKLQILIPHSLKLHHEFLQQSLRNKSLGMSDYKIALLCNAYSTNSDCFSLPMGVLVETIYGNGSMRINLPGTSCMASGSVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPNVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIHGTWCKDILQTIMSFTPHNWASHTLSCFPAPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMANENDIITHFSMQGSPPLFLCLLWKMLLETDRINQIGFRVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPSDFRNRVNDFVKENAPEHWLQSDWHNKHMNYHKKYPEKLYFEGLAEQVSPPLQLQSQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHLRDRTNLKRKLVHAIMSSLKDNRTPGWCLSETYLKFGMNPREDNVWIPDDTYYCKLIGRLVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQPLVPRENITAWMNAIGLVITALPEPYWIVLHDRIISVLSSPALTSETEWAGDPFALLDFTACHQSYSEMNCSYVLALTHAVWHHSSIGQLSLIPKFLSETLKPIVQTELQLLYVYHLVGPFLQRFQQERTRCMLEIGVAFYEMLQAVDQHCQHLSYMDPICDFLYHIKYMYTGDSVKEQVEKIIMTLRPAMKLRLRFITHSSIIETSSSAAAAASSASASSSSAGTPQPPPSSLSSTNTAASPSSSSQHAHTPM
Length1390
PositionTail
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.09
Grand average of hydropathy-0.022
Instability index46.53
Isoelectric point7.11
Molecular weight158271.64
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01941
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.26|      15|      17|    1005|    1021|       1
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  997- 1011 (27.14/14.00)	YKFHDRPVTYLYNTL
 1014- 1028 (26.12/22.73)	YERHLRDRTNLKRKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.83|      17|      19|     244|     262|       2
---------------------------------------------------------------------------
  244-  262 (28.23/19.89)	DPTT..LRFPLRGmlPYDKDL
  264-  282 (27.59/13.24)	EPQTglLRYVLEQ..PYSREM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.84|      15|      19|    1033|    1050|       3
---------------------------------------------------------------------------
 1033- 1050 (24.63/24.22)	MSSLKDNrtpGWCLSETY
 1055- 1069 (31.21/19.94)	MNPREDN...VWIPDDTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.77|      13|      18|     896|     908|       5
---------------------------------------------------------------------------
  896-  908 (22.72/15.42)	SDFRNRVNDFVKE
  917-  929 (27.05/19.91)	SDWHNKHMNYHKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.26|      15|      18|     410|     424|       7
---------------------------------------------------------------------------
  410-  424 (30.57/18.90)	CIPV.......PDISKPQ..STHS
  429-  452 (19.69/ 9.60)	CIWIhlnrkaqNDNSKLQilIPHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.64|      11|      19|     483|     495|       8
---------------------------------------------------------------------------
  483-  493 (20.02/ 6.75)	YSTNSDCFSLP
  502-  512 (19.62/ 9.93)	YGNGSMRINLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.18|      13|      19|    1119|    1132|       9
---------------------------------------------------------------------------
 1119- 1132 (16.97/14.68)	VPGKDVgNALLNVV
 1139- 1151 (24.20/15.24)	VPRENI.TAWMNAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.82|      12|      19|     353|     364|      10
---------------------------------------------------------------------------
  353-  364 (21.06/11.77)	HMVLSLHQKLAG
  373-  384 (22.76/13.32)	HLMWVLLQFISG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.32|      13|      19|     570|     583|      12
---------------------------------------------------------------------------
  570-  583 (17.54/15.74)	SRLL..VYmEIESLGI
  588-  602 (19.78/11.38)	SQLLpnVF.KSHAWGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.31|      55|     712|      29|      89|      19
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   29-   89 (94.37/86.80)	TPENERTKLISCLGAFRQYWgtLQQDSHEQCVQW.....................IVRFIHSQHSPKrisfLYDCL..AMAVET
  725-  802 (87.94/63.49)	TPHNWASHTLSCFPAPLQAF..FKQNNVPQESRFnlkknveeeyrkwksmanendIITHFSMQGSPP....LFLCLlwKMLLET
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01941 with Med23 domain of Kingdom Metazoa
Unable to open file!