<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01939

Description Uncharacterized protein
SequenceMEPSTKPGPSQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGFTADNLVKIIRDRGIHFSVVAPRKLPALRALFEWASPVTGAVEPHPDYSQDPFHMVLVRGISLPVSAGGGPPHKPVLPPQPPPGQSVVGPSQAPPPINPAHSYQNQPALTPAQVAAQMAVDAANNQKNRFPGPKHGQPSLPTVTTVNQLTMPQQVPPNPQQAVPPPGQLVGSQQPQPNQPTAPSAQPNIVRQAGVPGGQVTANPMGQPQGMANKVMAWTGVLEWQEKPKASSMDSTKLTRSLPCQVFVNQGENLNTDQWPQKLIMQLIPQQLLTTLGHLFRNSRMVQFLFTSKDMDSLRGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRAAVRWSRGSHAAQSSPNQPELSEPGARPHPGFPRQRPAAVLHSYNQMTMRAAGPTNQQPPVSGAPPNQVAQGGQPQPQGSILRLPNPGANPQLRSLLLSQQQPNLTMFSQQGAVSHMMSHQALGQQMVHPTPGGGPQIQNQWRQPMTGQMLMSGGQRGPIPQPGMPQVPSITDEDVIRDLL
Length708
PositionUnknown
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.06
Grand average of hydropathy-0.365
Instability index50.13
Isoelectric point9.00
Molecular weight76542.45
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01939
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     336.78|      60|      60|     230|     289|       1
---------------------------------------------------------------------------
  230-  277 (85.85/26.39)	..................GPPH.KPVLPP..QPPPGQSVVGPSQ...APP......PI...NP.A.HS...YQ....NQPALT..PAQVA.AQ
  278-  321 (57.94/15.29)	MAVDAANNQKNR....fpGPKHgQPSLPT..VTTVNQ.LTMPQQ...VPP...........NP..............QQ..............
  322-  363 (56.84/14.86)	.AV.............................PPPGQ.LVG.SQ...QPQ......PN...QPtA.PS...AQpnivRQAGVP..GGQVT.AN
  574-  643 (62.93/17.28)	MTMRAA............GPTN.QQ..PPvsGAPPNQVAQGGQP...QPQgsilrlPNpgaNP.QlRSlllSQ....QQPNLTmfSQQGAvSH
  644-  703 (73.22/21.37)	MMSHQALGQQMVhptpggGPQI.QNQWR...QPMTGQMLMSGGQrgpIPQ......PG...MP..............QVPSIT..DEDV....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.81|      28|      87|     365|     392|       4
---------------------------------------------------------------------------
  365-  392 (51.54/33.75)	MGQ..P..........QGMANKVMA..WTGVLEWQEKP...........KASS
  398-  444 (26.99/13.88)	LTRslP....cqvfvnQGENLNTDQ..WPQKLIMQLIPqqllttlghlfRNSR
  445-  480 (29.28/15.73)	MVQ..FlftskdmdslRGL.YRIMAngFAGCVHF...P...........HTTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.73|      32|      48|     145|     181|       5
---------------------------------------------------------------------------
  145-  181 (41.65/44.13)	SPpyLLPAVEsvSYTGFTADNLvKIIRDRGIHFSVVA
  196-  227 (59.08/39.00)	SP..VTGAVE..PHPDYSQDPF.HMVLVRGISLPVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.07|      27|      38|     503|     533|       6
---------------------------------------------------------------------------
  503-  533 (40.89/25.96)	PNdQSGFVN.GIRqviTNHKQVQQHRAAVRWS
  543-  570 (47.18/20.22)	PN.QPELSEpGAR...PHPGFPRQRPAAVLHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01939 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGGGPPHKPVLPPQPPPGQSVVGPSQAPPPINPAHSYQNQPALTPAQVAAQMAVDAANNQKNRFPGPKHGQPSLPTVTTVNQLTMPQQVPPNPQQAVPPPGQLVGSQQPQPNQPTAPSAQPNIVRQAGVPGGQVTANPMGQPQGMAN
2) QQHRAAVRWSRGSHAAQSSPNQPELSEPGARPHPGFPRQRPAAVLHSYNQMTMRAAGPTNQQPPVSGAPPNQVAQGGQPQPQGSILRLPNPGANPQLRSLLLSQQQPNLTMFSQQGAVSHMMSHQALGQQMVHPTPGGGPQIQNQWRQPMTGQMLMSGGQRGPIPQPGMPQVPSITDEDVIRD
227
524
373
706










Molecular Recognition Features






MoRF SequenceStartStop




NANANA