Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | TRQQKDTKEAEKQSRMAALLERLHAKHNASRPWEGTINVVRQAMEKRSVMNEAGHQLLLNCLETLQRALKVSSLPSMTDRLESIARQNMLGSHLSTTKTECYITSDMFYVEVQLDTGGQLVDVKVAHQGENPTSCSELIQHLSEKNFEAFSKHLKGLVDLYRLPGDNKLKTKMYIALQSLELDLTKMMTMFRLATNANTVETILHGSVGWLTPRSGGNLVSLQCYVSPYDIFEVETGSQLSLPDNNVPRSLGVSVSVTIEGTSAVYKLPIAPLITGSHPVDNKGTPSFSTVSNSNSVDLPACFFLKMNRPMPFSLSFIQRLGSATSIPVFETPPPLSLLYQLIVQSQLQLLEEGSATPATLNNMHFYSILPDQHHCYFLNGDAPVQDGHSLQGAMVSKIPFRHPAHVPLLLDIIRHQAAYNTLIGSCVKRTSVKEDSAGLLQFEVCPLTDSSFSVSFQHPVNESLVCVVMEVIDSRQVSCHLYKGPSDALICTDEFITKVVTRCMSIPVTMRAIRRKAETIQADTPALSLIAQTVETMVKNNPPPSGSPPYKMVGGDGTNPMGLPGLTGGNTPTGGGPPGGPNFAGPITSLFGMPRAERQAQEQQVHSDDYSKVTQNPILTSLLQITGNVGSSPSSQNAPQPHQTPPPTSSPASNTKSHPMLMNLLKDNPTQDFAALYSSSPLERQNSSSGSPRTDSMGGACPSGNTKGSSMPQHLQHHSVSHEDDFHRKLLSMDVDASQNSIFDVNLAGDSLDTHHSITPTLSQCGTPPPGSGMAYSQSHVQTQQQQPGSVPPRIVRLPSSDSIGPDITEILQELPEQTGKGSGGSHGQPEDGGPLGTPIRDSSSSGQGSAVFDSADIFNTNSNENPFTDAADLIAEAAATAATPNSDSSSTNFFPDASDFNPDLLTSGHGFSQSYFDDSSPSADGDMDLVKGFGGGSQQNTPSGTPQNPQHGQSTPEPSLKDPFDMGIVFGGNSGGGKPLLGQAPDLIDTHSGGSQSPLMMGLGGACSDFKTTDPKIKTGLIRPKDENGGNGGSGSGMGSSSAEGKQIKRSRTPSSEGKSKDKPPKRKKLDPDGKSPSHSSGGRPYTPPSGGSGSGGSISGGGSKSPGSSGRSQTPPGGATPPIPKITIQIPKGTITGGKTSSHSGYTSSSSATSSTGGVGGTSSSSKSHHSHSSSSGKIKSKEGSMTQSSSSKPGGSGGGGGQSQMKGSSQGMGVAKSGSSPITKHGLSGPGGAGGGMGSGSKIKPQGGKPPGSLMNPNIKPNISPSHSRSSSSGDKLSSPMKMQQSQVPGTPPSSKAKSPIGSGSGSSGGSKSSSGGSSQKPGGGGSSGSTSSSSTSSSGSMSFSGGSQSQYGSGAGQNNSNNPNSKGKSPSRNKKPSLTAVIDKLKSVGSGGVGEDGCEVGTPVGGPGSTSTPCGPGNVPSGPPNVGSSKHSSSSQSGDYKREKSDKDGKAKVMVTGGGSGDKKMMDPKTSGSGGTTLAKIIISKPDGGSPSIKAKVTLQKPGEGSGESIRQQISGLKASPLFSGSTPKHDRSSPSHSRSPGYTPLNQDSESESGSSSVAEKSHQNSPSSDDDQTVRPLPPQDYMSSIPLSSGEKHKKHKKEKKKLKDKERERDRDRDRDRDKEKKKSSMSMGSSSHSTKADSWSRSPISASDSSLSMLGSDRPSRSSPMYMRNEDDDLMDSALTGD |
Length | 1692 |
Position | Middle |
Organism | Poecilia formosa (Amazon molly) (Limia formosa) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.659 |
Instability index | 54.11 |
Isoelectric point | 8.70 |
Molecular weight | 176081.21 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP01937 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 12| 992.91| 105| 106| 1177| 1281| 2 --------------------------------------------------------------------------- 546- 606 (48.52/ 6.31) ..........................................................................................................S...G...S.PP.Y................KMVGG.......DGtnP....MGL..PGLTGG....NT.......P..T..G...GG..PPG....G...PNFAGPI......TslfgmPR.AERQAQE.Q....QV 609- 693 (80.36/16.22) DDYSKV...TQNPilTSLLQ...............................I.......TGNV.G..SS....PSS.....Q......NA..PQ.....PHQTP.PP...T...S.SP.A...............................................S....NTKSH....P..M...............LMNllkDNPTQDFaalyssS.....PL.ERQNSSSGS....P. 785- 853 (60.51/10.04) ..........................................................................QQ.....QQ...P.GSvpPR.....IVRLP.SS...D...SiGPdI................TEILQ.......EL..P....EQT..GKGSG.....GSHGQ....P..E..D...GG..PLG.T......P.IR..................DSSSSGQGS....AV 854- 956 (76.45/15.00) FDSADIfntNSNE..NPFTDAadliaeaaataatpnsdS......SST...N.......FFPD.A..SD....FNP.....DL...L.TS.........GHGFS.QSyfdD...S.SP.S................ADGDM.......DL..V....KGF..GGG................S..Q..Q...NT..PSG.TPQN...PQ....................HGQS........... 957- 1088 (58.72/ 9.48) ..................TPE.................P......SLK..dPfdmgivfGGNS.G..GGkpllGQApdlidTH...S.GG..SQsplmmGLGGA.CS...DfktT.DP.K................IKTGLirpkdenGG..N....GGS..GSGMGSssaeGKQIKrsrtPssE..GkskDK..PPKrKKLD...PDGK.........S.....PS.H...SSGGR....PY 1089- 1176 (104.54/23.75) TPP.................S.................G......GSG...S.......GGSI.S..GG....G.S.....KS...P.GS..SG.....RSQTP.PG...G...AtPP.I................PKITI.......QI..P....KGTitGGKTSS....HS.................GY..TSS.SSAT...SS.TGGV......G.....GT.SSSSKSHHS....HS 1177- 1281 (198.47/53.00) SSSGKI...KSKE..GSMTQS.................S......SSK...P.......GGSG.G..GG....GQS.....QM...K.GS..SQ.....GMGVA.KS...G...S.SP.I................TKHGL.......SG..P....GGA..GGGMGS....GSKIK....P..Q..G...GK..PPG.SLMN...PNIKPNI......S.....PS.HSRSSSSGD....KL 1282- 1376 (76.16/14.91) SSPMK............MQQS.................QvpgtppSSKaksP.......IGSGsGssGG....SKS.....SS...G.GS..SQ...kpGGG.G.SS...G...S.TS.S................SSTSS.......SG..SmsfsGGS..QSQYGS....GA.................GQ..NNS.N..N...PNSKGK.......S.....PS................ 1377- 1450 (84.83/17.61) .........RNKK..PSLTAV................iD......KLK...S.......VGSG.G..VG....ED.............GC..EV.....GTPV....................................G.........G..P.............GS....TST......P..C..G........PG.NV.....PSGPPNV......G.....SSkHSSSSQSGDykreKS 1451- 1547 (73.47/14.07) D..........KD..G......................K.......AK...V.......MVTG.G..GS....GDK.....KMmdpK.TS.........G......S...G...G.TT.LakiiiskpdggspsikAKVTL.......QK..P....GE.......GS....GESIR....Q..QisG...LKasPLF.SGST...PK.HDRS......S.....PS.HSRS..PG....... 1550- 1601 (49.04/ 6.47) ................PLNQD.................S......ESE...S.......GSSS.......................................VAeKS..hQ...N.SP.S................SDD.................................DQTVR....P..L..........PPQ.DYM........SSI......P.....LS.......SGE....KH 1606- 1692 (81.84/16.68) KEKKKL...KDKE.....RER.................D......RDR...D.......RDRD.K..EK....KKS.....SM...SmGS..SS.....HSTKA.DS...W...SrSP.I......................................SA.......S....DSSLS....M..L..G...SD..RP..SRSS...PMYMRNE......D.....DD.LMDSALTGD...... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.73| 21| 23| 445| 467| 4 --------------------------------------------------------------------------- 445- 467 (30.96/25.23) VCPLTDSSfSVS...FQHPvNESLVC 469- 492 (32.76/17.10) VMEVIDSR.QVSchlYKGP.SDALIC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.40| 12| 28| 368| 379| 5 --------------------------------------------------------------------------- 368- 379 (24.99/13.05) SILPDQH..HCYFL 397- 410 (18.42/ 7.83) SKIPFRHpaHVPLL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 72.26| 22| 509| 219| 240| 6 --------------------------------------------------------------------------- 219- 240 (39.44/22.14) LVSLQCYVSPYDIFEVE.TGSQL 731- 753 (32.82/17.31) LLSMDVDASQNSIFDVNlAGDSL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GTTLAKIIISKPD 2) IPKITIQIPKG 3) IPLSSGEKHKKHKKEKKKLKD 4) PSRSSPMYMRNEDDDLMDSAL 5) SIKAKVTLQK | 1480 1126 1593 1669 1497 | 1492 1136 1613 1689 1506 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab