Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDIGDYGTNVVCTYELNSIAYSFFECPSDATSVSTELYKLVAQLQQLGLLAAKDNKKAGLWIFETGDNAEPASSPSGAAQLPSLASNLGIDLALKHSGSYDSNSLLESWKSLSKPPTNTISSPSTDSGEPLSQKESFEKHFRAAQAAIMNKEATVNNSLIGLNNDAGTINPTLKDRARQFQLLAQSRLRLHIHDYFLTAVFLSLGYALCLDHGYIPLSSRTLVVPKSNLATTGPQITAQSNNGKGEDRLQLVTLSSDYTGSKVLVIKATLTTSMSYIGCDLPRLVKHEDVPIPANATLILGPGGSTGNFKGLANNGFQSTVSKFATDSDEAQHSGNEGQPSSHRLRSRCLEWLVGKGINKERLENSAWFMVEIYLNQLTSNARQGLSEERVLIPWPSFLCFRQTDNTLSSNDAFGTLSTYDPLEFAQTWYAGQQDREATIIRRKKERDAAEAAAKSQADSEAQDLHSLYSPLALRRSSVAGLVYPTPPDGVQHTVGATPTFDEAVSTPGQQGLPLSTDASSSLVTKTEADANGPLDIASHADFDFQDTSNGNLFGDAGDDLFGEENDITDADFSFFDEPDIFQGNQDVEMPGQDNAPEVVENELTLGPKDDLNMGDVPDMADVHMGNTDESPVEESLPPDLPSDTDPARQIEIKTEASMEGPETSMDEPSPPLKPEYVFGRLSTFDVFSKPLLTKPQEDISSVVLNPAGAFGGVDFKALFASLHQKYGSHGRFIYPPPKVSPNTLRAKFPTTDYFNRRRRRKLAGKSSIVRGVHTGSDHHFLVPGQTINFEQPTQRGSRSPSPSSDQDDSSDEMDGSYSHNSSSLKRRQQLEDTSESNDDEEITSSFQELQVGQVDETNNAALDTVYPFALDSDFARWSAAMFLAWPNPWANEYTLTDAEYIAAAQILGDQAISYTLRYPNDGNRHTSSLEENIKATYTPDLIRQDVVQAAKKYFKGASPQTLSNFLDIQGVPRQLTGNNRLPPRPMPSSQGSQGSQGSNPTKPNPIFPLPSPHLQLRRSDSRLSVLPSALPFWDVLGLAPRGNGKHVTSLCVFPKAVGMAESADLFLENIRSAYETRRLGSHERLNTEGSVNGLLPIELGGQATRFASDQGLSVIREALFQVANLLASSAADSTNFVVYFVYDPESPDILVPICSAFHSMFEVYKLAMAGKTVSNELVLQLVPLNFVSARTHLVVLPPTDYTRLAMEVYDRCFDFQAGVASPSVAIEPPLPRTIDFKLTATPSASLLQENSCLQIAYAQSIDDRWITAAWSDNTGSEQMTASYCLGRQDAPLTRQFSDIAHEIWETTLDIIASKKVHWRIIIAKCGVMEAQDVRFWKGLSETERNAQISLTLLSVDTQPALQLLPPGLSIPASTLTSQSTFYTTPVSTPQPSSILSPDQSGGTPTATPTDGTGELKIEPDATLIDLTNQSYGAVLAHRVNNSNSPLEVRPTAISGYLIKRTGASSSDVPAVMEVNIVWTDINPRLAENPLREILAWYSGLATLARARGIVDPVKDTRPWHIAAAEKAVRLLYLLM |
Length | 1536 |
Position | Kinase |
Organism | Pseudogymnoascus sp. VKM F-103 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.353 |
Instability index | 45.45 |
Isoelectric point | 4.90 |
Molecular weight | 167439.91 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP01899 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 358.06| 59| 182| 485| 543| 1 --------------------------------------------------------------------------- 485- 543 (103.36/49.96) PTPPDGVQHTVGATPTFDEAV..STPGQQGLPLSTDASSSLVTKTEADANGP...LDI...........ASHADF 576- 622 (65.04/28.64) FDEPDIFQ...G.....NQDV..EMPGQDNAPEVVENELTLGPKDDLNMG......DV...........PDMAD. 624- 667 (38.22/13.73) .........HMGNTD..ESPVeeSLP..PDLPSDTDPARQIEIKTEASMEGPetsMD.................. 669- 733 (76.62/35.09) PSPPLKPEYVFGRLSTFD.VF..SKP.LLTKP.QEDISS..VVLNPAGAFGG...VDFkalfaslhqkyGSHGRF 1372- 1422 (74.82/34.09) PASTLTSQSTFYTTP.....V..STP.QPSSILSPDQSGGTPTATPTDGTGE...LKI...........EPDA.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 475.40| 151| 541| 314| 477| 4 --------------------------------------------------------------------------- 314- 477 (232.42/215.49) NNGFQSTVSKFATDSDEAQHSGNE....GQPSSHRLRSRCLEWLVGKGInkerLENSAWFMVEIYLNQltSNARQGLSEERVLIPW.PSFLcfRQtDNTLSSNDAF.G....TLSTYDPLEFAQTWYAGqQDReatIIRRKKERDAAEAAAKSQADSEAQDLHSLYSP.LALRRS 859- 1020 (242.97/181.67) NNAALDTVYPFALDSDFARWSAAMflawPNPWANEYTLTDAEYIAAAQI....LGDQAISYTLRYPND..GNRHTSSLEENIKATYtPDLI..RQ.DVVQAAKKYFkGaspqTLSNFLDIQGVPRQLTG.NNR...LPPRPMPSSQGSQGSQGSNPTKPNPIFPLPSPhLQLRRS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 339.74| 110| 446| 736| 858| 5 --------------------------------------------------------------------------- 736- 858 (166.38/111.09) PPPKVSPNTLRAKFPTTDYfnRRRRRKLAGKS.SIVRGVHTGSDHhfLVP..GQTINFeqptqRGSRSPSPSSDQDDSS.........DE..MDGSYSHNSSSlkrRQQLEDTSESNDDEEITSSFQELqVGQVDET 1184- 1307 (173.36/87.30) PLNFVSARTHLVVLPPTDY..TRLAMEVYDRCfDFQAGVASPSVA..IEPplPRTIDF.....KLTATPSASLLQENSClqiayaqsiDDrwITAAWSDNTGS...EQMTASYCLGRQDAPLTRQFSDI.AHEIWET --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EENDITDADFSFFDEPDIFQ 2) HGRFIY | 564 730 | 583 735 |
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