<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01897
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDEWATFFAHALDRRLPTDKLEQFAKVLSTKSPLATPLIAELLLRPSESRNYDLDPQVSLYVQALLRIDILDVPSVLRALLRHSTSRPVDATKEDQEVASGSQTRWTKSYGHEERLVYGLSKIVAAGDRPKSAQEALVMANALTEWMRLLVMSNAADDMMREIGAGNDTHNQETMAVRVAVGALLVALAENSTVNDALKNRCPKDTLKGFSQSLANFTPLLINGSSMFAERLELYTKTLVALEPMDKKAQKAGAEIDQIIDSAMALGMDNIPVVEIPTMNSRAGLYVYLNSLLTGRPMVDDNQLLNFLHNRYQGDIQTTCIDLIVSSFDILANAIFRSESPQTTFLLRSFLINKVPLLISMISAPMFPPLSPELCITEALSHVDTNAFPTFSSMFDDTSAGDMFSDSVRQDFCFSCCLHGLIPEESIERLLGEIPMQTLPAGGRYTKDEVLEQCLSDSEKIEAFTDELEHMDGNVGAVSQAITELLRRLCESKDTMALKSLCAHLARKPSSLDVLLIFDKPLTILPPICQLLDAWRYDDDQGEYQPVYEEFGSILLLVLAFVYRYDLSATELGVQTPDSFIAKLLVRGSTARLLDDLSSVESSQLDGWIKGLFNAEGGGLGDEPMALCPPQDFYLLVPTLFSQIVLASQHGHLTDDVLRGGLEYLLDPSLLPSLIPALLSLASNILTAPPPSSLLQALILPQSISAEASLLHNAILPIPAPHLSRSLRALQRSVPTRTDLDPLIAALRPHLHFSRSAIDLTTDFPVPPNIPTAVRHAARALINWNPPAAPPNYSPRLPVLAVRMLGARRALLTLLEELAHQCALGNSGTAYDVVASLVCAPPKAAAGVQGRITLREALASEAAKVGAEVGKEGPEAERAEVVVRLYRRVEALSAGGGIDEQAGLMGADLGIAGVGGEGLVGEDMMGVLSGEGMMGLEGGMLDDMKLDF |
Length | 948 |
Position | Tail |
Organism | Pseudogymnoascus sp. VKM F-103 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus>
unclassified Pseudogymnoascus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.069 |
Instability index | 44.01 |
Isoelectric point | 4.82 |
Molecular weight | 102950.18 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP01897
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 97.76| 27| 27| 665| 691| 1
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665- 688 (34.31/13.94) ...................LLDPSLLPSLIPALLSLASN.ILTA
689- 718 (30.62/11.68) P.PP.............ssLLQALILPQSISAEASLLHNaILPI
765- 807 (32.84/13.04) PvPPniptavrhaaralinWNPPAAPPNYSPRLPVLAVR.MLGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.50| 14| 18| 905| 922| 2
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905- 918 (25.07/21.53) MGADLGIAGVGGEG
925- 938 (23.43/ 8.78) MGVLSGEGMMGLEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 26.52| 13| 15| 852| 865| 3
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845- 861 (11.23/ 8.82) AAGVqgrITlREALASE
862- 877 (15.28/ 7.36) AAKVgaeVG.KEGPEAE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.01| 13| 16| 210| 222| 4
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210- 222 (21.96/13.64) FSQSLANFTPLLI
228- 240 (21.04/12.76) FAERLELYTKTLV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.58| 16| 18| 356| 371| 5
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356- 371 (31.39/16.82) PLL.....ISMISAPMFPPLS
372- 392 (22.19/ 9.87) PELciteaLSHVDTNAFPTFS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.57| 21| 40| 34| 58| 7
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34- 54 (36.20/18.98) LATPLIAELLLRPSESRNYDL
71- 91 (35.36/22.40) LDVPSVLRALLRHSTSRPVDA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 72.40| 22| 35| 410| 434| 8
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410- 434 (35.97/29.59) QDFCFSCCLHGlipEESIERLLGEI
447- 468 (36.43/21.39) KDEVLEQCLSD...SEKIEAFTDEL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.17| 26| 293| 176| 202| 11
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176- 202 (37.77/29.17) AVRVAVGALLVALAENSTVNdALKNRC
477- 502 (44.41/29.35) AVSQAITELLRRLCESKDTM.ALKSLC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.80| 24| 27| 556| 581| 14
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556- 581 (32.88/25.05) LLVLAFVYRY..DLSATElGVQTpDSFI
584- 609 (36.91/18.95) LLVRGSTARLldDLSSVE.SSQL.DGWI
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