<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01884

Description Uncharacterized protein (Fragment)
SequencePLLRPLLAYEHHIGVLAALRATTASLTSTLRAASLAVDAATLLPATPTAASSTEERVAALLLSREAEFLVPLPANQSVTIKLRSDLGIQTRFRIEITPALAAVCRAPPNPSVEEVRTFLWWAAGCAVVRAVIDRGEEGGVEEGLKGWRETASPCLVRKEEGGRSREIGVVVVEGRLELKVRNGKEVGVKVWGVDEVGEERGVWEVVEEVGRRDGTEGAWGDGHEVIREVTEIA
Length233
PositionHead
OrganismPseudogymnoascus sp. VKM F-4516 (FW-969)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus.
Aromaticity0.04
Grand average of hydropathy-0.020
Instability index44.49
Isoelectric point5.24
Molecular weight25096.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01884
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.85|      18|      25|      15|      39|       1
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   15-   35 (22.48/21.93)	VLAAlraT.TASLTSTLRAASL
   42-   60 (24.38/ 7.55)	LLPA...TpTAASSTEERVAAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.21|      23|      26|     102|     127|       2
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  102-  127 (35.96/26.27)	AVCRApPNPSVEEvrTFLWW...AAGCAV
  131-  156 (37.25/17.51)	VIDRG.EEGGVEE..GLKGWretASPCLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.71|      10|      25|     183|     192|       3
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  183-  192 (19.61/10.84)	GKEVGVK.VWG
  210-  220 (15.09/ 6.74)	GRRDGTEgAWG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01884 with Med17 domain of Kingdom Fungi
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