<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01883
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDEWATFFAHALDRRLPTDKLEQFAKVLSTKSPLATPLIAELLLRPSESRHYELDPQVSLYAQALLQIGILDVPSVLRALLRHSTSRPVEAAKDEQEGANSSQTRWTKSYGHEERLVYGLSKIVAAGDRPKSAQEALGTVNALTEWMRLLVMTNAADDMMREIGAGNDAHNQETTAVRVAVGALLVALAENTTVNEALRNRCPKDTLKGFSQSLSNFTPLLINGSSMFAERLELYTKTLVALEPVDKKAQKAGAEIDQIIDSAMALGMDNIPVVEIPTMNSRAGLYVYLNSLLTGRPMVDDNQLLNFLHNRYQGDIQTTCIDLIVSSFDILANAIFRSENTETTFLLRSFLINKVPLLISIISAPMFPPLSPELCITEALTHVDTNAFPTFSSMFDDTSAGDMFSDSVRQDFCFSCCLHGLIPEESIERLLGEIPMQTLPAGGCYTKDEVLEQCLSDSEKIEAFTDELEHMDGNVGAVSEAITELLRRLCENKDTMALKSLCVHLARKPSSLDVLLIFDKPLTFLPPICQLLDTWRYDDDQGEYQPVYEEFGSILLLVLAFVYRYDLSATELGVQTPDSFIAKLLIRGSTARHMDDLSSLETSQLDGWIKGLFNAEGGGLGDEPMALCPPQDFYLLVPTLFNQIVLASQHGHLTNDVLHGGLEYLLDPSLLPSLIPALLSLASNILTTPPPSSLLNALILPQSISAEASLLHNAILPLPAPHLSRALRALQRATPSRTDLEPLITALRPHLHFSRSAINLTTDFPVPPNLPTAIRNTTRALVSWSPPAAPPNYNPRLPVLAVRMLGARRALLSLLEELGHQCALGNAGTAYDVVASLVCAPSKAAAGVQGRMTLREALTAEASKVGAEVGKGGPEAESAEVIVKLYRRVEALSAGGGIDEQAGMMDADLGIGGVGGEGLVGEDMMGVLSGEGMMGLEGGMLDDMKLDF |
Length | 948 |
Position | Tail |
Organism | Pseudogymnoascus sp. VKM F-4516 (FW-969) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus>
unclassified Pseudogymnoascus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.040 |
Instability index | 41.27 |
Isoelectric point | 4.81 |
Molecular weight | 102933.87 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP01883
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 119.52| 30| 35| 24| 53| 1
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24- 53 (51.63/29.76) FAKVLSTKSPLATP..LIAELLLRPSESRHYE
61- 90 (48.89/27.80) YAQALLQIGILDVP..SVLRALLRHSTSRPVE
576- 595 (19.00/ 6.43) ............TPdsFIAKLLIRGSTARHMD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 110.08| 27| 27| 665| 691| 2
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665- 691 (49.05/23.90) LLDPSLLPSLIPAL.LSLASN.ILTT....PP..P
694- 721 (37.65/16.80) LLNALILPQSISAE.ASLLHNaILPL....PA..P
740- 771 (23.38/ 7.91) .LEP.LITALRPHLhFSRSAI.NLTTdfpvPPnlP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 141.30| 33| 35| 841| 873| 3
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786- 826 (47.38/24.56) PPAAPPNYNPRLPVlavrmlgaR.RALLS......LLEELGHQCALGN
841- 873 (52.18/27.73) PSKAAAGVQGRMTL........R.EALTA......EASKVGAEVGKGG
874- 913 (41.74/20.84) PEAESAEVIVKLYR........RvEALSAgggideQAGMMDADLGIGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 91.42| 29| 35| 353| 382| 4
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353- 382 (48.32/40.80) NKVPLLISII...SA.PMFP.PLSPELCITEALtH
386- 419 (43.10/30.53) NAFPTFSSMFddtSAgDMFSdSVRQDFCFSCCL.H
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