<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01871

Description Mediator of RNA polymerase II transcription subunit 18
SequenceMHEFLLFAPVPAQQHHELLQQLSGLTAMQPRHRLERRLIFKANRKATRINTRLGGGSQDVQGGEIQRLFKMLNGSTYYVRVVGVVNEADFGASSLTDQEDGYDYESQFWRMEWRDIPEAGTRSGVTSRLMANAVLPQGDIIKVMETWGYTFVNEYVIEGDVFIYNDTTIFLHRVLNYPEASQTVQSPRTTLPPLKDLTLLDPSGSYLLQASITVQDGTSPELAIQGLYSLRDQLKTAVKLEQADRLSLDTRNWSFQARTFSSLGMKRLSSSGGVSPPPVRRKVESTTTKTAVASFFTPISQKKPEKITWRIVNKSLIAGKYASGSGENAQTQPGKRRKVAAFDLDSTLIATASGNRFARDSSDWKWWNPKVPEKLKQLNVDGYQIIILSNQKKISIQTDLKAGRSESKSLSNFKEKALAVMRQLDIPLSIYAATQYDEYRKPRTGMWKEFLDDYDLDVDDRRVDLEESFFVGDAAGRPGDHSCVDRDFAANVSIRFYTPEEFFLDASPEQVIRQFDPKAYLDVDPDAPVVSTFSKSHPLELVIFCGSPGAGKSTFYWKYLKPSGYERVNQDILKTRQKCIKVAKDHLTAGHSVAVDNTNANTETRAYWVELAKEFQIPIRCIYFTSPPNLCRHNDAVRASNPSLNPESRTLLPGIAFADFSRRFEEPTLAEGFEDITRVEFRFEGDEESRKVWGQFWV
Length698
PositionHead
OrganismTalaromyces marneffei PM1
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Trichocomaceae> Talaromyces> Talaromyces sect. Talaromyces.
Aromaticity0.10
Grand average of hydropathy-0.479
Instability index38.40
Isoelectric point7.62
Molecular weight79033.25
Publications
PubMed=25330172

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01871
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.69|      14|     199|     364|     377|       1
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  364-  377 (30.18/18.31)	WKWWNPKVPEKLKQ
  557-  570 (27.51/16.07)	WKYLKPSGYERVNQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01871 with Med18 domain of Kingdom Fungi
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