<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01860
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MKPIQQWRKLLHECVARRIEVDVFCKLVKILARRAPLQQAYLVGVLLESRAVTADIFPYDPLIPRYATALRKLGLIRTATLLDGLRKQPFIESQSTADAEQSQKTVNSSILMTDTRIVQDLIAPLSSSSPSLDTQDIQSIFAITAEWILDVARWHTSNINDENQMGGLMSSPDALALFESLGILLVALSATAKGHDALASESTSDFKIPLGQALTAYLSTSASISLNLRNRLDSLQKGYQLYGEPPSKDLDVQMMDGMSTNALQFEASVLDGPVINSRAGLYIYINALLIGRPLIDDEMLLSYLSNRYGGQQEVLIQELITATFDVLSNAMYRNESTRNMFVFRSFLVNKLPPFLAGMAATSIEQIPMEMCISHALNRVDPNAFPSFSQMFEMQGNTVLSDVRQEFLFACALHRLIPESSIERLLGENPMQTLPVGGRYVKNDIVAQILSNQGAADRLISEIELMEGNAGAVVAAVTDPLCTLLDSWKWDEDQGESQPVYDEFGSILLLVMAFKYRYDLSQYDLGVTASSSFVLKLFERGSTSMKLASLDAKQNKSVGDWISALFMSEGISEETWSSCSPQEFYLLVATLFSQTLGACEMGMLELDTIKGGFEYLLQPFLLPSLVFALKWLGNYIWESPEADLLLLLKVLRALVKPNSISGEAEACHQTVLNIAAQSLEEQLKDVRTRLPGGRSDHQSDIQPNPNQDIQQEIQSLLDILEPYLSFQCNGNSRRSELDSWTTHTDGICGVIRVTFQGLILWSASAEMSMSPHAYTHRLILVGIRLSTASNVLSALLDELRAQAEEASGSLDLAIDIAATLICAPIPESFAQEQTIYHPIDSTKEAFPRCLLLTLRQALMIQHQNVPRLSEKDPTRAEVIVRLTRRVNALLTPPAHVGTIDVTNIIDNMNLEAAAAAAGHDVIDLNNGNGTGNDGGAGAPGESIDQILNNVVAATSNDHHGTGNESQDLDVTGMDTSLDDILNAAHMGNPEFLDLDMDGMF |
Length | 999 |
Position | Tail |
Organism | Talaromyces marneffei PM1 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Trichocomaceae> Talaromyces>
Talaromyces sect. Talaromyces.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.008 |
Instability index | 46.49 |
Isoelectric point | 4.66 |
Molecular weight | 109746.77 |
Publications | PubMed=25330172
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP01860
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.15| 17| 28| 955| 972| 1
---------------------------------------------------------------------------
955- 972 (29.61/21.13) NDHHgTGN.ESQDLDVTGM
981- 998 (29.54/15.75) NAAH.MGNpEFLDLDMDGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.38| 17| 27| 751| 767| 3
---------------------------------------------------------------------------
751- 767 (29.85/19.92) RVTFQGLILWSASAEMS
776- 792 (26.53/16.84) RLILVGIRLSTASNVLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 80.81| 23| 27| 339| 365| 4
---------------------------------------------------------------------------
339- 353 (20.29/ 9.43) ......................NMFVFRSFLVNKLPP
358- 381 (30.81/28.09) MAATSIEQ...........ipmEMCI..SHALNRVDP
382- 417 (29.71/14.56) NAFPSFSQmfemqgntvlsdvrQEFLFACAL.HRLIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.85| 19| 22| 898| 919| 5
---------------------------------------------------------------------------
898- 917 (27.38/25.04) IDVTNIIDNMNlEAAAAAAG
921- 939 (35.46/18.86) IDLNNGNGTGN.DGGAGAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.27| 23| 28| 830| 857| 6
---------------------------------------------------------------------------
830- 857 (31.06/37.82) QEQTIyhPIDSTK.....EAFPRcllLTLR.QAL
860- 888 (30.21/18.79) QHQNV..PRLSEKdptraEVIVR...LTRRvNAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.94| 19| 22| 284| 305| 7
---------------------------------------------------------------------------
261- 279 (30.86/16.81) NALQFEASVLDGPVINSR.A
286- 305 (27.08/15.76) NALLIGRPLIDDEMLLSYlS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.11| 13| 27| 701| 714| 8
---------------------------------------------------------------------------
701- 714 (20.30/17.90) QPNPNQDiQQEIQS
726- 738 (23.81/15.46) QCNGNSR.RSELDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.97| 14| 25| 55| 68| 10
---------------------------------------------------------------------------
55- 68 (26.62/13.73) DIFPYDPLIPRYAT
83- 96 (24.36/12.05) DGLRKQPFIESQST
---------------------------------------------------------------------------
|