<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01710
Description |
Mediator of RNA polymerase II transcription subunit 15 (Fragment) |
Sequence | DDAMRKAGVAHNKSSKDMESHVFMKAKTREEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQNLTGGPPAGAPGMGMASRAQGAAMSGMSGLGPMGQQMSLPGQQQPPGTSGMAPHGMPGVSTATQQTQLQLQQIAQQQQQQQQQFQQQQVALQQQQFQAQQSAMQQQFQVQQQQAAAAAAAQQQQQQQQQQLQAVQQQQQHMLKLQMQQQQQNQQQMQQQQQQQQLQRIAQMQQLQAAQAMQAQQQQQQQQQQQQQQIPQQQIQQQPPQQVMQQQMQQMQQQQQQQQQQQQQQQQQVAQAQQPQLPPQSQPQPQPMVSQPQAISGQIPSQVMPVTLTPQQLKAMQVRAQLVQQQQAAAAVQAAQAQAAQMGASGQLPILYSLLLLLILYFSTFQVSQNNITMMSSPSPVQQAQTPQSMPPPPQPQPSPQPGQPTSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPAAARTPQNFSVPSPGPLNTPGNPNSVMSPASSSQSEEQQYLEKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFMPAMTAIHGPPITAPVASPRKRKYEEDERQTIPNVLQGEVARLNPKFLVNLDPSHCSNNGTVHLICKLDDKNLPNVPPLQLSVPADYPDQSPLWIKNPRQYAANPFLQSVYRYMTSKLLQLPDKHSVTALLNTWAQSIRQACLSAA |
Length | 762 |
Position | Tail |
Organism | Nipponia nippon (Crested ibis) (Ibis nippon) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Pelecaniformes> Threskiornithidae>
Nipponia.
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Aromaticity | 0.04 |
Grand average of hydropathy | -0.784 |
Instability index | 87.04 |
Isoelectric point | 9.67 |
Molecular weight | 84535.97 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP01710
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 285.70| 33| 33| 186| 218| 1
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122- 153 (54.15/ 7.93) VSTA.TQQT.QLQ....LQQIAQQQQQ..........QQQQFQQ..QQVA
154- 196 (54.71/ 8.10) LQQQ.QFQAQQSA....MQQQFQVQQQqaaaaaaaqqQQQQQQQ..QLQA
197- 230 (63.63/10.87) VQQQ.QQHMLKLQ....MQQQQQNQQQ.........mQQQQQQQ..QLQR
231- 264 (48.86/ 6.29) IAQM.QQ....LQaaqaMQAQQQQQQQ..........QQQQQQQipQ.QQ
265- 298 (64.35/11.10) IQQQpPQQVMQQQ....MQQMQQQQQQ..........QQQQQQQ..QQQQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 554.16| 149| 155| 305| 456| 2
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34- 120 (120.15/27.04) .....SLVARLI.....IHFRD...I.......HNKKSQASVSDPMNALQNLTGGPPAGAPGMG.MASRAQGAA.....MSGMSgLGPMGQQM...S.........LPGQQQ...........P.PGT........SGM.AP...HGM.P..........................................
305- 377 (80.19/18.68) .......................................................................................................P.QLPPQSQ...........PQPQPMVSQPQAISGQ.IPS..QVM.PVTLTPQQLKAMQVRAQLvqqQQAAAAVQAAQAQAAQMGASGQ
378- 532 (234.52/61.06) LPILYSLLLLLI.....LYFSTFQVS.......QNNITMMSSPSPVQQAQTPQSMPPPPQPQPSPQPGQPTSQP.....NSNVS.SGPAPSPS...SFLPspsP.Q.PSQSPaaartpqnfsvPSPGPL.NTP....GN..PN..SVMsPA..SSSQSEEQQYLEKL...KQLSKYIEPLRRMINKIDKNED
537- 664 (119.30/26.79) LSKMKSLLDILTdpskrCPLKTLQKCeialeklKND...MAVP.......TP...PPPPVP.PTKQ..QYLCQPlldavLANIR.S.PVFNHSlyrTFMPamtAiHGPPITA...........PVASPRKRKYEEDERQtIPNvlQGE.VARLNPKFL..................................
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