<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01705

Description F-box-like/WD repeat-containing protein TBL1X (Fragment)
SequenceSGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATAATAGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSV
Length498
PositionTail
OrganismNipponia nippon (Crested ibis) (Ibis nippon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Pelecaniformes> Threskiornithidae> Nipponia.
Aromaticity0.07
Grand average of hydropathy-0.309
Instability index35.62
Isoelectric point5.45
Molecular weight53537.86
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01705
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     384.52|      40|      40|     313|     352|       1
---------------------------------------------------------------------------
  193-  228 (43.95/22.17)	S.NSGSTQLVLRHCirEG.GHDVP....S....NKD...........VTSLDWNSDG
  231-  269 (59.50/32.43)	L.ATGSYDGFARI...WT.EDGNLA..STLGQHKGP...........IFALKWNKKG
  271-  311 (30.53/13.32)	Y...........IL..SA.GVDKTT..IIWDAHTGEakqqfpfhsapALDVDWQNNT
  313-  352 (70.85/39.92)	F.ASCSTDMCIHVC..RL.GCDRPV..KTFQGHTNE...........VNAIKWDPSG
  355-  394 (68.62/38.45)	L.ASCSDDMTLKIW..SM.KQDTCV..HDLQAHSKE...........IYTIKWSPTG
  406-  445 (47.81/24.72)	L.ASASFDSTV.....RLwDVDRGVciHTLTKHQEP...........VYSVAFSPDG
  447-  486 (63.25/34.91)	YlASGSFDKCVHIW..NT.QSGTLV..HSYRG.TGG...........IFEVCWNARG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.62|      22|      22|     109|     130|       2
---------------------------------------------------------------------------
   87-  105 (19.05/ 7.72)	...QQQASAAAAAAATAATAGA
  109-  130 (35.01/19.68)	AVSQQNTPKNGEATVNGEENGA
  132-  153 (34.55/19.34)	AINNHSKPMEIDGDVEIPPNKA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01705 with Med16 domain of Kingdom Metazoa
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