<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01702

Description F-box-like/WD repeat-containing protein TBL1X (Fragment)
SequenceSGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAGGGATAATAGATTTAFSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVGDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTDDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSV
Length498
PositionTail
OrganismEgretta garzetta (Little egret)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Pelecaniformes> Ardeidae> Egretta.
Aromaticity0.07
Grand average of hydropathy-0.324
Instability index35.00
Isoelectric point5.45
Molecular weight53499.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01702
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     420.59|      78|      81|     187|     266|       1
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  116-  169 (58.74/30.95)	...........................P......KNGEAT.VNGEENGA.HAINNHSKPMEID.G.DveiPPNKATVLRGHESEVFICAWN
  187-  266 (136.57/88.57)	WNLNENSNSGSTQLVLRHCirEGGHDVP......SNKDVTSLDWNSDGTLLATGSYDGFARIW.T.D...DGNLASTLGQHKGPIFALKWN
  307-  391 (129.08/78.09)	WQNNTTFASCSTDMCIHVC..RLGCDRPvktfqgHTNEVNAIKWDPSGMLLASCSDDMTLKIW.SmK...QDTCVHDLQAHSKEIYTIKWS
  397-  436 (38.58/17.59)	.......................................TS.NPNSN.IMLASASFDSTVRLW.DvD...RGVCIHTLTKHQEPV......
  438-  483 (57.62/30.21)	........................................SVAFSPDGKYLASGSFDKCVHIWnT.Q...SGTLVHSY.RGTGGIFEVCWN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01702 with Med16 domain of Kingdom Metazoa
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