<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p> Detailed information on MDP01692
Description
Mediator of RNA polymerase II transcription subunit 23 (Fragment) Sequence KTEVIEEAFPGMFMDTPEDERTKLISCLGAFRQFWSSLSQESHEQCVQWIVRFIHSQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWALTFKLVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVVAYILERNACLLPAYFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAMCNSWKLDPTTLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDINKPQSTHAFAMTCIWIHLNRKAHSDNSKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGVLVETIYGNGNMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSLALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPAPLQVFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYESHLRERTNLKRKLVHAIIGSLKDNRPLGWCLSDTYLKCAMNAREDNPWIPDDTYYCKLIGRLVDNILRKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVINSPSLTSETEWVGYPFQLFDFTACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLIPIVKTEFQLLYVYHLVGPFLQRFQQERTRCMIEIGVAFYEMLLNADRYSSHLNYMDPICDFLYHMKYMFTGDSVKDQVEKIICNLRPALKLRLRFITHISKMEPAAVPQQPLNNGSPAQQPSQVPVNVALPVTQ Length 1357 Position Tail Organism Egretta garzetta (Little egret) Kingdom Metazoa Lineage Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Pelecaniformes> Ardeidae> Egretta.
Aromaticity 0.10 Grand average of hydropathy -0.030 Instability index 45.32 Isoelectric point 7.74 Molecular weight 155546.11 Publications
Function
Annotated function
GO - Cellular Component nucleus GO:0005634 IEA:UniProtKB-SubCell
GO - Biological Function GO - Biological Process
Interaction
Repeat regions
Repeats
>MDP01692
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.27| 14| 17| 1029| 1045| 1
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1029- 1043 (25.22/22.33) WCLSDTYLkCAMNAR
1048- 1061 (30.05/14.20) WIPDDTYY.CKLIGR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.12| 20| 127| 571| 591| 2
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571- 591 (33.53/24.78) FISQLLPTV..FKSHAWGIlHTL
698- 719 (36.59/22.42) WCKDILQTImsFTPHNWAS.HTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 156.01| 40| 785| 161| 201| 5
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161- 201 (70.12/55.10) NACL..LPAY.FAVTEIRKLYPEGKLPHWLLGNL..VSDFVDtFRP
912- 936 (33.72/19.43) .................HKKYPE.KLYFEGLAEQ..VNPPVQ.IQP
945- 988 (52.17/34.92) NVCLrfLPVFdIVIHRFLELLPVSKSLETLLDHLggLYKFHD..RP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.14| 10| 31| 326| 335| 6
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326- 335 (18.69/10.61) IFFVLFQFAS
359- 368 (19.45/11.35) LMWVLLQFIS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 71.61| 17| 619| 609| 631| 9
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609- 625 (28.70/12.90) QLLSHLHSL..AAVPQTNQ
638- 651 (17.54/14.52) RLITALGSS..EVQPQ...
1317- 1335 (25.37/ 9.61) RFITHISKMepAAVPQQPL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.59| 33| 76| 761| 795| 10
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761- 795 (54.55/39.22) NDIITHFSMQGSPPLFLCLlwKMLLETDHINQIGY
838- 870 (60.04/35.85) NDMVWKYNIVTLDRLILCL..AMRSHEGNEAQVCY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.78| 19| 681| 397| 415| 11
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397- 415 (37.90/26.44) PVPD....INK.PQ.STHAFAMTCI
1073- 1097 (23.87/13.58) PFPNcdwrFNEfPNpAAHALHVTCV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 153.19| 50| 861| 255| 305| 16
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255- 305 (85.42/70.47) ALLRYVL.eQP.YSRDMVC...NMLGL..NKQHKQRCPVLEDQLVDLVVYAMERSETE
1112- 1169 (67.77/49.91) ALLNVVLksQPlVPRENITawmNAIGLiiTALPEPYWIVLHDRIVSVINSPSLTSETE
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Explaination for Stockholm format
The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column. #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP01692 with Med23 domain of Kingdom Metazoa
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA