<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01665
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | PRGVPGPAMDLAYVCEWEKKPKSNHCPSIPLVCAWSCRNLIAFTTDLRNEEEKDLTHMVHIIDTEHPWDVYSVNSGHTEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWENTVGSVVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLERVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAIFYSSSSQRPVDEQTIKRQRTAAPLVHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREENHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLVGHTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRRMPLSYS |
Length | 838 |
Position | Tail |
Organism | Calypte anna (Anna's hummingbird) (Archilochus anna) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Caprimulgimorphae> Apodiformes>
Trochilidae> Calypte.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.005 |
Instability index | 46.96 |
Isoelectric point | 8.19 |
Molecular weight | 93661.90 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP01665
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 281.53| 91| 96| 244| 339| 1
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244- 339 (148.88/114.34) SVVNEKCKIDTEILPSLFMRCT.TD..PARKDK.YPAItHLKFLARDMSEQVLLCASNQNSSIVECWSLRKeglPVN..NIFQQ..ISPVVGDKqPMILKWRIL
340- 438 (132.65/86.59) SATNDLERVSAVALPKLPISLTnTDlkVANDTKfFPGL.GLALAFHDGSVHIVHRLSLQMMAIFYSSSSQR...PVDeqTIKRQrtAAPLVHFK.AMQLSWTSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 341.53| 117| 135| 461| 595| 2
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457- 591 (163.22/175.80) SMGH......VLDMNmSLRHLLFLLEYcmvTGyDWWDILLHVQPNmvQ.NLVEKLHeEYMRQNAAL....QQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIaisctLKSLL.....RPHfLNTPDkspgDRLTEIC....SKITDIDIDK
592- 728 (178.31/128.55) VMINlkteefVLEMT.TLQSLQQLIQW...VG.DFVLYLLASLPN..QgSPVRPGH.SFLRDGASLgmfrELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRL.....LTKLWlccreENH.ITEPD....DTLIDECcllpSQLLIPNIDW
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