<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01654

Description F-box-like/WD repeat-containing protein TBL1X (Fragment)
SequenceSGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQATSAAAAAAATAATAGATTTAVSQQNTPKNGEATVNGEENGAHAIRMGHLQPLWTTSSSVSPPSQVLFYLLGQHQEGFLSLYNCLYRSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSV
Length496
PositionTail
OrganismCalypte anna (Anna's hummingbird) (Archilochus anna)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Caprimulgimorphae> Apodiformes> Trochilidae> Calypte.
Aromaticity0.08
Grand average of hydropathy-0.290
Instability index38.69
Isoelectric point5.80
Molecular weight53606.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01654
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     370.06|      40|      40|     311|     350|       1
---------------------------------------------------------------------------
  193-  226 (38.31/17.51)	...SGSTQLVLRHCirEG.GH.DVP....S....NKDV...........TSLDWNSDG
  229-  267 (48.86/24.15)	L.ATGSYD.GF..A..RI.WTeDGNL.aSTLGQHKGPI...........FALKWNKKG
  269-  309 (31.48/13.22)	Y...........IL..SA.GV.DKTT..IIWDAHTGEAkqqfpfhsapaLDVDWQNNT
  311-  350 (71.56/38.41)	F.ASCSTDMCIHVC..RL.GC.DRPV..KTFQGHTNEV...........NAIKWDPSG
  353-  392 (69.07/36.85)	L.ASCSDDMTLKIW..SM.KQ.DTCV..HDLQAHSKEI...........YTIKWSPTG
  404-  443 (49.53/24.56)	L.ASASFDSTV.....RLwDV.DRGVciHTLTKHQEPV...........YSVAFSPDG
  445-  484 (61.26/31.94)	YlASGSFDKCVHIW..NT.QS.GTLV..HSYRG.TGGI...........FEVCWNARG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.44|      19|      22|      88|     106|       2
---------------------------------------------------------------------------
   88-  106 (28.39/16.29)	QQATSAAAAAAATAATAGA
  113-  131 (33.05/20.03)	QQNTPKNGEATVNGEENGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01654 with Med16 domain of Kingdom Metazoa
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