<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01620
Description |
Mediator of RNA polymerase II transcription subunit 8 (Fragment) |
Sequence | REEKQLELTLEALISQVADLKNSLVSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLLRNQVIIPLVLSPDRDEEIMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLITDAARISPDVAQKQIQSLNKMCSNLLEKITKEERESDSGGLRQNKQTFNPADTNALVAAVAFGKGLSNRRPPGSGGSVQTGQPGAAAIIAGASGMQQVPMSGAPAQQQPMLAGVQMAQAGQPGK |
Length | 247 |
Position | Head |
Organism | Cuculus canorus (common cuckoo) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Cuculiformes> Cuculidae> Cuculus.
|
Aromaticity | 0.03 |
Grand average of hydropathy | -0.457 |
Instability index | 47.68 |
Isoelectric point | 5.75 |
Molecular weight | 26936.31 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364144
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP01620
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.36| 29| 36| 174| 207| 1
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174- 207 (42.57/37.56) AdtnaLVAAvAFG......KGLSNRRPPGSGG..SVQTGQPG
210- 246 (39.78/21.98) A....IIAG.ASGmqqvpmSGAPAQQQPMLAGvqMAQAGQPG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.89| 25| 28| 65| 90| 2
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65- 90 (39.22/31.96) KTPLLRNQViIP..LVLSPDRD.EEIMRQ
94- 121 (35.67/23.72) RVPVFSHEV.VPdhLRTKPDPEvEEQEKQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.37| 20| 28| 123| 142| 3
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123- 142 (32.84/20.57) ITDAARISPDVAQKQ.IQSLN
152- 172 (29.53/17.86) ITKEERESDSGGLRQnKQTFN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.49| 17| 28| 8| 24| 4
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8- 24 (25.46/18.32) LTLEALISQVADLKNSL
38- 54 (29.03/21.80) LTWPSVLDSFALLSGQL
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