<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01618
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | SPPGRTEPLPCPLRGRAGGMDLAYVCEWEKKPKSNHCPSIPLVCAWSCRNLIAFTTDLRNEEEKDLTHMVHIIDTEHPWDVYSVNSGHTEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWENTVGSVVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTATESLCRLRCRVALADVAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNNSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFYGSSSQRPADEPTLKRPRTAGPLVHFKAMQLSWTSLALAGVDSHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPSMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDVDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREENHITEPDDALIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLVGHTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRKMPLSYS |
Length | 849 |
Position | Tail |
Organism | Corvus brachyrhynchos (American crow) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Passeriformes> Corvoidea> Corvidae>
Corvus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.015 |
Instability index | 47.03 |
Isoelectric point | 8.22 |
Molecular weight | 94565.94 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP01618
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 429.61| 134| 200| 2| 144| 1
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2- 144 (219.46/182.11) PPGR....TEPLpCPLRGRAGGMDLAYVCEWE.KKPKSNHCPSIPLVCAWSCRNLIAFTTDLRNEEEKDLtHMVHIIDTEHPwDVYSVNSgHtevITCLEWDQSGSRLLSADADGH..IKCWSM.TDHL.ANSWENTVGSVVeGD..PVVaLSW
203- 347 (210.15/140.27) PNGQvltaTESL.CRLRCRVALADVAFTGGGNiVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSL.FMRCTTDPARK.DKYPAIT.H...LKFLARDMSEQVLLCASNQNNsiVECWSLrKEGLpVNNIFQQISPVV.GDkqPMI.LKW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 80.45| 25| 190| 448| 490| 2
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448- 472 (44.27/22.90) SLALAGV.DSHGKLSMLRISPSMGHV
500- 507 (-0.26/27.26) ...............LLHVQPSM...
546- 571 (36.45/15.32) SSTIARVcDYHAKLFLIAISCTLKSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.54| 15| 362| 153| 167| 3
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153- 167 (26.92/14.33) LHVEKSGASNFGEKF
501- 515 (26.62/14.11) LHVQPSMVQNLVEKL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 197.50| 62| 362| 364| 429| 4
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364- 429 (93.54/79.73) LPKlPISLTNTDLKVAND...TKFFPGLGLALAFHDGSVHIVHRLSLQMMAvFYGSSSQRPADEptLKR
728- 792 (103.96/71.66) LPS.QLLIPNIDWLPINDgiiSKLQNKQLVRLQFGKAPGLVGHTVSSQFDA.FVRAPGQPKIDH..LRR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.45| 24| 33| 646| 673| 5
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646- 673 (36.12/35.05) PVRPGHSFLRDGASLgMFRelmVVIRIW
682- 705 (43.33/27.14) PVYTATSDTQDSMSL.LFR...LLTKLW
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