<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01613
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | AMDLAYVCEWEKKPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEEKDLTHMVHIIDTEHPWDVYSVNSGHTEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWESTVGSAVEGDPIVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFYGSSSQRPVDEQTIKRQRTAGPLVHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHILNTPDKSPGDRLTEVCSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCTCCEENHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISRLQNKQLVRLQFGKAPGLVGHSVSSQYDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRRMPLSYS |
Length | 833 |
Position | Tail |
Organism | Cuculus canorus (common cuckoo) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Cuculiformes> Cuculidae> Cuculus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.007 |
Instability index | 47.38 |
Isoelectric point | 7.89 |
Molecular weight | 92993.11 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP01613
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.43| 29| 34| 655| 688| 1
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660- 688 (52.93/37.63) PSCLPVY.TATSDTQ.DSMSLLFR..LLTKL.WL
691- 724 (36.50/14.33) TCCEENHiTEPDDTLiDECCLLPSqlLIPNIdWL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 188.30| 52| 139| 454| 508| 2
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424- 451 (23.72/ 8.19) ...MQLSWTSL.......ALAGIDSHGKLsmLRISPSM...................
454- 508 (81.41/59.94) VLDMNMSLRHLLFLLEYcMVTGYDWWDIL..LHVQPNMvQNLVEKLHeEYMRQNAAL
595- 642 (83.17/48.16) VLEMT.TLQSLQQLIQW...VG.DFVLYL..LASLPNQ.GSPVRPGH.SFLRDGASL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.28| 30| 36| 87| 120| 3
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67- 105 (35.88/32.11) NSGHTEVITCLEWDQsgsrlLSADADGhIKcwsMTDHLA
106- 138 (49.40/26.57) NSWESTVGSAVEGDP..ivaLSWLHNG.VK...LALHVE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 116.14| 39| 139| 163| 205| 4
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163- 205 (52.74/49.44) GKPMEGwIAVTISGLV...TVSLLKpnGQVLTSTESLCRLRCrVAL
305- 346 (63.39/39.69) GLPVNN.IFQQISPVVgdkQPMILK..WRILSATNDLDRVSA.VAL
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