<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01540

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMTTKNHKDTFDDYSNLFHKDSIANDVTLEDCHTNVLPLADISKLKWKCFRTNNRNTTKCKEAIKADLVLKAYSLCISENYICLWRRIPSEDDENDYPRGEFTLRSAKELWVFWFDKREPRNLASYTCDLVVRDEYDADHQNQNDVVRYDIRCLLFRAIHNLIERSLFTMGQKRFGKWFVATGTKEELKQSMPQRNYSLAYGFSFFVHGDIMVCATINIQRQPLMCRLDLLDYFSKKSVPLILGPHGIRATLVIDQIEYVKKEVVYISNKYKRDILVAKQYNEIETIAEEQYNDWRGFYPLPVYDAEDIKYRIPTVSEILPRMTLVEIDNLKILWPTEYIGIIMDEYVCNGDRKCFYEKLVDEDQEVATIMANSKDNFDTKNDNTNNRIMHDIERVDLECFCRHHNEDIDQNGRIFEETIISSEYAVLSENTIQKPSTNISSSSPTKNIEKDEKFENAMSFLKEIDNELKKEEAKQMEIDDDDDIEKFLNFDSSIKTSVPKSPDKNSNENKNDKVESSEKKDNDNKNNKNKNENNEEEKEKETTKIVIPKNVEPAIGSKWRYSNYCGKVGCICPLCFKLGKLALVTQNKKNKKNEKYSVLQEELMMIDEGKENEPIYSGNCDVKSNQLILSTSYESLIKQRLEAKTTIPKHPIRLSEAERNNLDTKPFYSSSNFALRDYISNFQSMKFGDPKIFQEMKNLPGYNTIKTTECKESFPKFTPLIRTRFEYFRKKKYLLARISHKKGKRKIYHTNHTMSRLCLTPPISQRNRLINRARRRYTFPKEDTLMARDVTFYDKTVQRNTNDMLNSFINCIYDINNTKKYNNKLQIYKNYEITTLKIYKENNIDELIEQFEEKRNEINVERFYKRIINEIKNKFTIDEEESIDLDYLDPFKWHFEGKETFESLNFTYNNEITLNHVPEYLIMNDFLYVVVNEKLEKLKNRSNIISNKKRMFPISLDNEPLNIMKYESDKNINNIDESEYKILRKIYDDYLIKSKEDIIPLSKKINSFDMLCENKLPKTTFTKDLVHGFYNEYLINELLEDDEDEEEETEKEIENMETGSNFDIDEFLRDADDCNSIDDDSLLYNSNKLIELNQNEEKKKKYYEMGYFEKENFSIVHEDDIIEELLINYKTKYDPNFYQYKMLYENFISDKDNDNDIDNLKNIEKTNGNNFLISLENVNKDIENKSITITYQKEIEDIFKSNKNINNDEDKHSEYIEDFGEWNDFFTEIDYEEIVPEKLRPKKCDLFEIYTNNKSQCCHVFNQILDEEKDIFKISDEFKNNKILKKPLRGITKKILENIEEEFKFHENYITRKYKNIWKNVLLSHNFNSLYIPPKAHSDNRIMNTILNQENFSININDKNKLSINDIMKYISNQRNEKTCRLNKCFERAKSDQQTKKNIMRHKYDRMHRAFEYSNRFFPVRTADDTELIHMMFDYEKNSSMFSNHNIPQQHNSDYFNHQQAYNSMDDFHGMSNNYHIHNSQQNQGYFNDQLNYQNRHNNQYYNNHNQNAYQNIYNNSSHFDNFMGDDYEQMLIHNNSGSWNQLQHTNYHSRNPYQPNYHQNQSNIFGGNTNYNRNIPSTVENDEEQSCSMKENEIILKSKYFKTSNENNLYYHSLLDKFIGYNFSLKFNFREFISSETSNTLYQNQYYTLNFNNRIETSFIYDYNDINNPEFTLKERKYFTKKFENQICIHKGLSHVFIDEKGSFKALQYILNNYIYCNLFNDQCYYNCNIKKYTKRHYISEPVMVPEELLNTNDNVFISNNYNNSDNITKRRKLDINLTNQTNINDMEIDNIPFYLEERNNVVRKQVNTSQSGSIFKSFPCTVGYSQIDGTNDISNDIDTWSKNICKKINDKEEEEEEKLISSKNIDKQNIRHLQYKTSHYSESYNNLLTNYNNAKKVDENYFIYNYDSETLENYKTDEFIKARYSNTNILFDNSNEKNKINRFNNDNFINNYIGESSIYSTIDLDSNDQEYVKLNENIGKDFYSLMTEIAFRISEKRDDDEFRNEVMHLCNVDRSLSTLSIPSISGSDDSESTSPSKYDINFAQECFTYNSSNQIQNQSDYYEIEEIYDTNDIHSSFEDESNDSSSDESNDSMDYNNSPKNNIEEMESDIEGEIKLTEFDTSSDDSTEEFIDSDLELEILNNIINEDHFQIEYCEKKLKQNYEPLILCRELQNNWSGYNLIVQSIIPRYKNINDIYQLCIIAESQELFDNLRDSILKKIKKLRKDKLSRFAPDYYKIMKKVKDYGYTLPYETYILYREGPVVSYSHYLIHNDIDNFIHLNDCECCECLQLPPIPNYIDLDDSTSKNPYLYNYRNPKFIKKGITVYNISSSRKRFIPPMMPHHNLKNSFTTNNKSSSNWKYINVVKSLNDKIDKTVKNKRYYECGYNAYISNEDRQRANAAAIIEVGETATIKVLNNTKPPNFLRLNNKGHPVTRDAYERLVSKKEYFKMKNKRLSTLNFKAPKIYFFKGYDSRSNEREGFYNSIVSSTERQIQLPDIIMEESEEEEEHDDYYELSSVNIFTEDCPILENNADISNNSLDSTCNNQGLNSINPLTPGNPMTPLTPQMTNPLTPSNSLMDPQQGMNALTPNPGSISSSGPPSNYMNPGSNSYSNPGSNSYPNPGSNSYSNPASNTYPNPGSNNSVLQSIISQPNSQVNQQHFIPGNISSPSSFHSGNQMPQSMMASPIMNSENQFLTNPGNYHYNRQINQNCFNPPPMRENYNTGMFQNINNQNIFLGNDKHNVNYSNDGTNTLYEHNQYNSNMNQISNTDTINNVRSDINSGVNQIMSSHYNSPIQQFNSGNNMTDRNSQQHPLEMVNHQTSGNMNQGYINSSGHHMISGNQHGNYNNQIHDNQYYNKIPNLNYENNGSNYINNRNLYGDENNPNEISYDSSSYNNNNMGGQMNVNQVSNNYQINYGQNNFMDCDNNVRMYNNDDHDGTNIEGIYDDINQQNNKNNQQNINNSPMPLLYNESNIITEPSIIDSNTEYNCLYYKMEPESIPPASSLLPVETEKLSIDNNHILPMKSNNKIEIIKKDIISRREIKKDSIGISLLLHDSVFELYYDIIFDGCPICSCNSNIMSDDYGMYLRPPGILNKKSVQKSEWSGFYLAGDKNKCKCGFSALRHKLFSYNSGLFKEDAEEGSGLGAIYEQHPNRYHKLYNKLTEYDLSFINLFRIQSLNREMGAQINSIQSMLTKCLPPLTNAISNKYLNKCSNYMFSQVDINEKEHAIYNSLKASIEDDNESHLCIPNRNRKLIDYPSFLHPWSIQFPNNAKDASDADCYIILNNVSNFFKTLIHNTQCFGPEKRDVFKTFTWSELVKSAIKSTKVPDEYSYAPEPIPSVILAAEKDLISCAPQIVCSWEKLALSPIDQPKDVLYFAITPDNDFIIEKTKLYFHELSKIYENYKLGRHIKLSKDIVEDGIFKVPIMTSDNCKIESESEKEYYNFFNEIINDKEYLDKMKSYAAFIEKQVYQFFEYNDILFDRRAFWECVKHEMSGPSNISLDTSSSSSNLLHNNHDYILSNYPSGYYDHCSPSNMNRSGTELDQQRTDSPIKDEDMAEMPHIIVIYIINPFNFGLKINQPEQPKFALISIMRAFNVFLMKLNITKRFRIQLEIINLQSIMDFAGYLCDKKRNERWYAPDPVYTRNKNFKFSAYEQLRSLSFAIYTHSRIYNTEDVRYVLAKSVTKFGYTSTVLDHVNEDIEAGDKIFKLPCNLYRLSSPKRNPIQMNGKSLKRHIEDTVLFVSYCLVEDKWLVVTVSDHLGYLLDNCLINLQVIHKDNEIVKYKKGNRILDAISRLWVYIMGVLASETRNWRIVIGRFGRVGHTELKAWMHILSKTNIKRYNTKIKEACNLCAESLNSQSCPIIVSACFVSMEAEHNLRLFNNAVAKFKVLASASSNIRSSKQKVIHSPDDVSVTHILVFPTTVDLSIDLAQGKDGQEKDDFESLVLDEGNDEIMEFINNGFINDDDGDELKTAEPDKNTEENFFNIDSSDVEASNQPMAIGYYISTAPTGKLPNWFWSQCPKAKDRCPVHLRNSLHIVTSNILQSDELMLNFKNTESTHPLDSTATDDVLRYVLKTYNALSWLNVDCVTSERRSCLPIHIQALARLCNAVETFMF
Length4118
PositionMiddle
OrganismStrongyloides ratti (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides.
Aromaticity0.11
Grand average of hydropathy-0.788
Instability index48.87
Isoelectric point5.42
Molecular weight481909.94
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.32|      15|      15|    2610|    2624|       1
---------------------------------------------------------------------------
 2604- 2619 (25.90/ 8.74)	YMNPGsNSYSNPGSNS
 2620- 2635 (22.42/ 6.32)	YPNPGsNSYSNPASNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.56|      17|      19|    2866|    2884|       2
---------------------------------------------------------------------------
 1475- 1491 (26.33/ 8.44)	YHIHNSQQNQGYF.NDQL
 2866- 2883 (23.24/ 6.78)	ENNGSNYINNRNLyGDEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.41|      17|      19|    2751|    2767|       3
---------------------------------------------------------------------------
 1551- 1567 (27.30/12.49)	RNPYQPNYHQN..QSNIFG
 2757- 2775 (27.11/12.32)	HNQYNSNMNQIsnTDTINN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.41|      16|      19|    2553|    2570|       4
---------------------------------------------------------------------------
 2553- 2568 (32.20/16.79)	NPLTPGNP.M.TPLTPQM
 2570- 2585 (22.63/ 8.94)	NPLTPSNSlM.DP.QQGM
 2711- 2726 (21.98/ 8.41)	NCFNPP.P.MrENYNTGM
 2836- 2851 (25.60/11.38)	HHMISGNQ.H.GNYNNQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.64|      19|      19|     497|     515|       6
---------------------------------------------------------------------------
  497-  515 (31.91/14.84)	SVPKSPDKNSNENKNDKVE
  517-  535 (30.73/13.94)	SEKKDNDNKNNKNKNENNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.03|      17|      19|     805|     823|       7
---------------------------------------------------------------------------
  805-  823 (25.95/20.49)	LNSFINciYDINNTKKY..NN
  825-  843 (25.07/11.59)	LQIYKN..YEITTLKIYkeNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.24|      22|      22|    1330|    1351|       8
---------------------------------------------------------------------------
 1147- 1170 (21.53/ 7.23)	.FISDK.D.NDNDIdnLKNIekTNGNN
 1309- 1326 (26.90/11.43)	.YITRKYK.N...I..WKNV..LLSHN
 1330- 1351 (39.46/21.28)	LYIPPKAH.SDNRI..MNTI..LNQEN
 1354- 1376 (34.36/17.28)	ININDKNKlSINDI..MKYI..SNQRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.92|      20|      20|    2884|    2903|       9
---------------------------------------------------------------------------
 2884- 2899 (22.27/ 7.40)	.....NPNEISYDSS.SYNNNN
 2900- 2921 (26.27/10.62)	MGGQmNVNQVSNNYQiNYGQNN
 2923- 2941 (32.38/15.55)	MDCD.N.NVRMYNND.DHDGTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      96.26|      19|      19|    2637|    2655|      10
---------------------------------------------------------------------------
 2637- 2654 (24.53/12.73)	.........PNPGSNNSVLQSIISQPN
 2655- 2681 (27.15/15.27)	SqvnqqhfiPGNISSPSSFHSGNQMPQ
 2778- 2793 (25.68/13.85)	S........DINSGVNQIMSS...HYN
 2794- 2805 (18.90/ 7.29)	S........PI.....QQFNSGNNM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.81|      22|      22|    2095|    2116|      11
---------------------------------------------------------------------------
 2094- 2115 (37.56/19.44)	SM..DYNNSPKNNIEE.MESDIEGE
 2116- 2140 (24.24/ 9.22)	IKltEFDTSSDDSTEEfIDSDLELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.69|      21|      22|    3560|    3580|      12
---------------------------------------------------------------------------
 3560- 3580 (40.00/32.38)	EMPHIIVIYIINPFN.FGLKIN
 3583- 3604 (33.69/25.58)	EQPKFALISIMRAFNvFLMKLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.16|      21|      22|    1259|    1279|      13
---------------------------------------------------------------------------
  864-  880 (19.06/ 7.98)	..YKRIINEIKNKFTIDEE..
 1259- 1279 (36.06/24.26)	HVFNQILDEEKDIFKISDEFK
 1290- 1304 (25.04/13.71)	GITKKILEN......IEEEFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.59|      27|      29|    1629|    1656|      14
---------------------------------------------------------------------------
 1602- 1629 (29.54/ 9.47)	..FK..TSNENN...LYY.hsllDKFIGYNFSLKFN
 1631- 1657 (46.61/21.12)	REFI..SSETSN...TLYQ....NQYYTLNFNNRIE
 1658- 1688 (29.44/ 7.06)	TSFIydYNDINNpefTLKE....RKYFTKKFENQI.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     381.86|     133|     377|     545|     741|      15
---------------------------------------------------------------------------
  586-  738 (202.73/175.04)	QNKKNKKNEKysvlqeelmmiDEGKENEPIYSGNCD........VKSNQliLSTSYESLIKQRLEAKTTIPKHPIRLSEAER.NNLDTKPF....YSSSNFALRDYISNFqsMKFGDPKIFQ..EMKNLPGYNTIKTTECKESFpkftpLIRTRFEYFRKKKYLLARI
 1844- 1930 (83.12/23.02)	KNICKKINDK...........EEEEEEKLISSKNIDkqnirhlqYKTSH..YSESYNNLLTNYNNAKKVDENYFIYNYDSETlENYKTDEFikarYSNTN....................................................................
 2258- 2329 (96.02/30.81)	.....................................................................................YREGPV....VSYSHYLIHNDIDNF..IHLNDCECCEclQLPPIPNYIDLDDSTSKNPY.....LYNYRNPKFIKKGITVYNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.31|      18|      19|    3441|    3458|      16
---------------------------------------------------------------------------
 3441- 3458 (32.98/18.93)	KEYYNFF.NEIINDKEYLD
 3461- 3479 (28.33/14.97)	KSYAAFIeKQVYQFFEYND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.94|      14|      19|    3081|    3096|      17
---------------------------------------------------------------------------
 3081- 3096 (23.11/20.16)	SDDYGMYLrpPGILNK
 3102- 3115 (27.84/16.10)	SEWSGFYL..AGDKNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.99|      14|      19|     443|     460|      18
---------------------------------------------------------------------------
  447-  460 (23.50/19.26)	NIEKDEKFENAMSF
  477-  490 (23.49/ 6.88)	EIDDDDDIEKFLNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.11|      26|      29|    1174|    1199|      19
---------------------------------------------------------------------------
 1174- 1199 (43.33/26.70)	SLENVNKDIENKSITITYQKEIEDIF
 1201- 1226 (48.78/31.31)	SNKNINNDEDKHSEYIEDFGEWNDFF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.50|      26|      29|    1392|    1419|      20
---------------------------------------------------------------------------
 1385- 1416 (37.47/24.31)	CFEraksDQQTKKNIMRHKYDRMHRAFeySNR
 1417- 1445 (43.03/21.91)	FFP.vrtADDTELIHMMFDYEKNSSMF..SNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.56|      42|     180|    1755|    1796|      21
---------------------------------------------------------------------------
 1755- 1796 (75.78/36.08)	DNVFISNNYN..NSDN.ITK....RRKL.DINLTNQTNI.................NDMEI....DNI..PFY
 1934- 1985 (37.84/13.50)	DNSNEKNKINrfNNDNfINNyigeSSIYsTIDLDS.....................NDQEYvklnENIgkDFY
 2947- 3001 (54.93/23.67)	DDINQQNNKN..NQQN.INN.....SPM.PL.LYNESNIitepsiidsnteynclyYKMEP....ESI..P..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.16|      21|      22|    2351|    2372|      22
---------------------------------------------------------------------------
 2351- 2372 (32.36/23.68)	TTNNKSSSNWKYiNVVKSLNDK
 2376- 2396 (38.80/24.03)	TVKNKRYYECGY.NAYISNEDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.12|      16|      17|    3321|    3337|      24
---------------------------------------------------------------------------
 3321- 3337 (24.09/16.83)	SAIKSTKvPDEYSYAPE
 3341- 3356 (27.03/14.43)	SVILAAE.KDLISCAPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     433.73|     109|    1202|     914|    1033|      25
---------------------------------------------------------------------------
  345-  438 (124.97/67.40)	.....EYVCNGDrkcFYEKLVDEDQE....VATIMANSKDNFDTKNDNTNNRIM.....HDIERVDLECF..CR......HHNED..IDQNGRIFEET....IISSEYAVLSENTIqkPSTN.......
  914- 1027 (170.53/120.69)	LNhvpEYLIMND...FLYVVVNEKLEKLKNRSNIISNKKRMFPISLDNEPLNIMKYESDKNINNIDESEYKILR......KIYDDYLIKSKEDIIPLS....KKINSFDMLCENKL..PKTTFTkdLVH
 1035- 1117 (104.30/52.93)	IN.........E...LLEDDEDEEEETEKEIENM.........................ETGSNFDIDEF..LRdaddcnSIDDDSLLYNSNKLIELNqneeKKKKYYEM...GYF..EKENFS..IVH
 2202- 2245 (33.94/ 9.31)	.................................IIAESQELFDNLRDSILKKIKKLRKDK.LSRFAPDYYKIMK......KVKD.............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.42|      18|    1413|    1449|    1467|      26
---------------------------------------------------------------------------
 1449- 1467 (32.02/26.92)	QQHNSDYFNHQQAYNsMDD
 2811- 2828 (35.40/24.36)	QQHPLEMVNHQTSGN.MNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.33|      13|     904|    1132|    1144|      28
---------------------------------------------------------------------------
 1132- 1144 (26.02/12.30)	KYDPNFYQYKMLY
 2039- 2051 (24.24/10.87)	KYDINFAQECFTY
 2058- 2070 (20.07/ 7.52)	QNQSDYYEIEEIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.18|      21|    1413|    2407|    2430|      35
---------------------------------------------------------------------------
 2407- 2430 (31.12/21.29)	VGET...ATIKVLNNTkppNFLRLNNK
 3823- 3846 (35.06/15.92)	VGHTelkAWMHILSKT...NIKRYNTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.42|      10|      22|    2446|    2455|      36
---------------------------------------------------------------------------
 2446- 2455 (18.36/ 9.83)	KEYFKMKNKR
 2470- 2479 (18.06/ 9.52)	KGYDSRSNER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01540 with Med13 domain of Kingdom Metazoa
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