<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01501

Description Uncharacterized protein
SequenceMCNLLTSVMETKVTSKTSSLKALLLRAWRERWSDLQWGINIKTILPRGVSGDVYNLADCILQQALVGLGPNQLVLSYLKHSLSSQLVSYAAVLQRISKYDAFHKPHCILSLLEFLESIQIGITCRGKPEEDLLAAAVLSIVNWLLQCYLHTLTKMPQNNPLTPQPTELMDKPASILKQMLSSDFLCAMMYLAKYDDKDLYIEVVKKCQEIEALLKTSSLKSSIQIEDSLKKLCNLEDDCLTLSHEMSQMESITHCLQPLFAVQVLLNPSTETSVFVNQMLMVQRLKNYTNTRLYCEIIRACLMCLHNVTSTINESQWGAFTFLKVPLILKELHVAHSNADDKLEYSQDILDAFELLLQFTPLLDIVDTACSCNSVECLLNALQKVNLVTEKQTKHLSSRREGVTANLQKLEISIATSSIPKVIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGNSFELILAVATVEGKLKTFVTKLIKFNECSKQINEPVPPKTAAKRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVREYMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDLKSSNIKWHIACQSAMGAVKELLCAWESDVLGASDVKRALDGLRATACCLPVCAAAWLCAHMSITHQDALLKPLNMVQHFLTPLPGDEMQDNLKELSSLMSQIIRKMQYDVHPPTQSKTKVLSMSHSIISRQPILEQLETVWGNINQRGWINIQATQSLESLLNTGGSLWFVTNIVKEVLKYRYQEELDQAVDLAFAIFHLDIENCTLDLINHIIPQYLYNSLQSEELVEPQSSVLAKLCVYCIFSTLEYNNSSPCRGNNRKRVRRDLDAEELDALGVPANKILRLNEAGDTNPIFGSQSPQAQGSTNGQKSVVLRDPLLSALNGLFTIFSFLAGRDGEVSQQTHFILQFLRLMVQCGKDRTRIVLQGMPQTLVPCLLKALPELFTTDILLRFYDIQTAVGRKATARDLCMLRNINLKPSK
Length999
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.009
Instability index49.62
Isoelectric point6.25
Molecular weight112138.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01501
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     227.94|      67|     198|     203|     271|       1
---------------------------------------------------------------------------
  130-  165 (46.42/25.32)	........EDLLAAAVL...SI.VNWLLQ...CYLH....TLT.KMPQNNPLTP..QP.............
  203-  271 (102.76/75.56)	VVKKCQEIEALLKTSSL.KSSIQIEDSLKK.LCNLEDDcLTLSHEMSQMESITHCLQPLFaVQVLLNPSTE
  403-  462 (78.76/48.93)	VTANLQKLEISIATSSIpKVIVRAEPTLSGiLKTLNAD.YTKIHE.........ALLSML.YQVLTGNSFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.19|      16|      17|     920|     935|       6
---------------------------------------------------------------------------
  920-  935 (29.60/17.87)	QQTHFILQFL.RLMVQC
  938-  954 (24.59/13.72)	DRTRIVLQGMpQTLVPC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01501 with Med24 domain of Kingdom Metazoa
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