<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01500

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMASSGKSTREVLLSIVDDIELIAKEMIENTIAQKPLKLSNEEYAQLTELLIAKDNELKTILKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQMPGTHPGLSSDLHRAGHPVGEPPASQANQFAWHSSGEIHMSMSGQGSGVMNTHKQETEDVEVMSTDSSSSSSSDSQ
Length255
PositionMiddle
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.611
Instability index63.05
Isoelectric point5.70
Molecular weight28180.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.47|      29|      32|     109|     137|       1
---------------------------------------------------------------------------
   86-  102 (21.47/ 8.02)	..QDIQQLQRQ............LKEAEQIL
  109-  137 (48.63/24.98)	AKQKLQSIARANKRPVPSE.EL.IKYAHRIS
  144-  172 (41.37/20.45)	APLTWQQ..GDPRRPYPTDiEMrLGYLGRLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.88|      27|      33|      13|      41|       2
---------------------------------------------------------------------------
   13-   41 (38.23/35.52)	LSIVDDIELiaKEMIENTIAQKPLKLSNE
   49-   75 (41.64/31.37)	LLIAKDNEL..KTILKRAAEQAKINLKME
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01500 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDLPLNGQMPGTHPGLSSDLHRAGHPVGEPPASQANQFAWHSSGEIHMSMSGQGSGVMNTHKQETEDVEVMSTDSSSSSSSDSQ
172
255










Molecular Recognition Features






MoRF SequenceStartStop




NANANA