<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01497

Description Uncharacterized protein
SequenceMAGQQHPFPSGFPNVQQSAMRTQFGGGQMVSGLMGPQQGGMVNPQQFGVGVGVGVGVGGVGSNAMGIPSAQQVLAQQQQQQQSVAMQQQVQQMQQQQLQLQQQQQAAMVQQSNPTGNQATTPQTPVPPTQPPPQQQQQNKEFNTASLCRFGQETVQDIVSRTLEVFQTLRLLQPPTGTAQGANLANERKNKVQEQLRTLKLLFKRLRLIYEKCNENCQLQGMEYTHIESLIPLKEEWDMKSDEKKTSEAYRLACEESKEIMEQVMLKNRHLKEIIDHLRRIISEINTMLNMRRS
Length294
PositionHead
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.696
Instability index63.63
Isoelectric point8.91
Molecular weight32994.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01497
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.47|      19|      22|      71|      89|       1
---------------------------------------------------------------------------
   16-   37 (22.84/ 6.19)	QQS.AM.RTQfgggQMVSGLMG...PQ
   81-  102 (26.23/ 8.30)	QQSVAM.QQQ...vQQ.MQQQQlqlQQ
  103-  122 (24.40/ 7.16)	QQQAAMvQQS....NPTGNQAT...TP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.57|      27|      36|     145|     172|       2
---------------------------------------------------------------------------
  145-  172 (41.74/40.77)	ASLCRFGQETVQDIVsRTLE.VFQTLRLL
  182-  209 (39.83/32.65)	ANLANERKNKVQEQL.RTLKlLFKRLRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.43|      22|      39|     213|     238|       3
---------------------------------------------------------------------------
  213-  234 (40.11/32.36)	CNENCQLQGMEYTHIESLIPLK
  246-  267 (36.32/17.95)	TSEAYRLACEESKEIMEQVMLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.35|      14|      57|      67|      80|       4
---------------------------------------------------------------------------
   67-   80 (24.57/ 9.02)	IPSAQQVLAQQQQQ
  126-  139 (28.78/11.74)	VPPTQPPPQQQQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.43|       9|      16|      39|      48|       6
---------------------------------------------------------------------------
   39-   48 (14.11/10.13)	GGmVNPQQFG
   58-   66 (17.32/ 7.40)	GG.VGSNAMG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01497 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGQQHPFPSGFPNVQQSAMRTQFGGGQMVSGLMGPQQGGMVNPQQ
2) QQQQQAAMVQQSNPTGNQATTPQTPVPPTQPPPQQQQQNKEFN
1
101
46
143










Molecular Recognition Features






MoRF SequenceStartStop




NANANA