<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01494

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAYSVNISVEAPIENQIQEITYDGQEIYQAPLTLSENLAKIAQKIDFSKTNGEDVKKELESGEKSEEDTKDSASFQSSLWPWDSVRNKLRNALTEVCVLADVLAIAKEKHYMVLDPVPQEPTEVKPMIQVYARKKALAGAASVIMMGADRLKNCQNELARNRSTPDFHIELLRLRQNWRLKKVSNSIIGDLSYRTAGSKFPQTGMFEVTKAEEEEKNSTSPPASPNASNNTSGQTHPPNSKASALRVTIPSELQGVAYIEVLCQKDQEDLCSANISLLNNSAHSSNADMHWQQKLEAAQNVLFCKELFSQLAREAVHLRAPIPHMVVGNQIMATVLPGIQLIIGLCHSTGNDKKPTAPPPHKSEHDHVLEHSLHQLLREVHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTLLEQIIQQAQHYFMRLRTEYVLDTIAKEVKDPLIVSHWNALNSPTQSCVKINILTHGYDTVYRTSLVVHIGEKSLKCVCRDGRVMHMSYEPQELRDLIFCQIYQHQITAVQALAKCMGWQFLANSSHLGLGAVEPLGNASSCILASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGKNFLNKMELLMASLTSS
Length644
PositionHead
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.396
Instability index47.12
Isoelectric point7.13
Molecular weight71986.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01494
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.60|      48|      66|     275|     328|       1
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  275-  328 (68.66/61.93)	ISLLNNSAHSSNAD.......MHwqqKLEaAQNVLfcKELFSQLAREAVH..LRAPIPHMVVG
  339-  395 (78.94/48.76)	IQLIIGLCHSTGNDkkptappPH...KSE.HDHVL..EHSLHQLLREVHHknTHHPFPHPSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.11|      13|     170|     396|     408|       4
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  396-  408 (26.41/17.21)	PLGPSKRRCLAGP
  559-  571 (24.70/15.62)	PLGNASSCILASP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01494 with Med17 domain of Kingdom Metazoa
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