<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01488

Description Uncharacterized protein
SequenceMSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSILQKGLQYTEAEISIGEDGTEQRMVESLSLIDAVMPDVVASRQNQINQQKQQVKTEVQDTNGEEVVTSNEGVGTNERGGDRTEMEVDEQQQGSGRGTNASAVEIPDTKATILRGHESEVFICAWNPTTDLLASGSGDSTARIWDMSGSSQAPNQLVLRHCIQKGGTEVPSNKDVTSLDWKCDGTLLATGSYDGYARIWKTDGKLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAESGQCTQQFSFHCAPALDVDWQTNTSFASCSTDQCIHVCKLNVDKPIKSFQGHTNEVNAIKWDPQGNLLASCSDDMSLKIWSMKQDTWVHDLQAHSKEIYTIKWSPTGPGTHNPNMNLTLASASFDSTVRLWDVERGACIHRLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQNGQLVHSYQGTGGIFEVCWNSRGDKVGASASDGSVFVLDLRKM
Length512
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.421
Instability index36.68
Isoelectric point5.26
Molecular weight56121.80
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01488
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     351.86|      40|      40|     313|     352|       1
---------------------------------------------------------------------------
  163-  196 (36.93/19.61)	.......LRG.HESEVFICaW..........NP.T.TdLL.A.SGSGDSTARIWDM.
  230-  251 (20.58/ 7.63)	....................W..........KC.DgT.LL.A.TGSYDGYARIWK.T
  252-  293 (37.59/20.09)	.DGKLASTLGqHKGPIFALkW..........NK.R.G.NY.IlSAGVDKTTIIWDAE
  294-  334 (56.99/34.31)	SGQCTQQFSF.HCAPALDVdW..........QT.N.T.SF.A.SCSTDQCIHVCKLN
  335-  376 (53.32/31.62)	VDKPIKSFQG.HTNEVNAIkW........dpQG.N.L..L.A.SCSDDMSLKIWSMK
  377-  427 (52.01/30.66)	QDTWVHDLQA.HSKEIYTIkWsptgpgthnpNM.N.L.TL.A.SASFDSTVRLWDVE
  428-  469 (56.59/34.01)	RGACIHRLTK.HTEPVYSVaF..........SP.D.G.KFlA.SGSFDKCVHIWSTQ
  470-  509 (37.85/20.28)	NGQLVHSYQG..TGGIFEVcW..........NSrG.D.KV.G.ASASDGSVFVLDL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.99|      17|      35|     100|     116|       3
---------------------------------------------------------------------------
  100-  116 (27.14/15.21)	QKQQVKTEVQ..DTNGEEV
  119-  137 (20.74/10.08)	SNEGVGTNERggDRTEMEV
  138-  153 (24.11/12.78)	DEQQ.QGSGR..GTNASAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01488 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SRQNQINQQKQQVKTEVQDTNGEEVVTSNEGVGTNERGGDRTEMEVDEQQQGSGRGTNASAVEIPDTK
92
159










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
2) VFVLDLRKM
10
504
16
512