<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01486

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPLPIHDTYSMFGNVFNADDTIIRPLEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELDSKLAINTDAMESVDNLGSEQQTPDPCNPCDRIMCKTIDDMISTNGLY
Length227
PositionMiddle
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.470
Instability index49.79
Isoelectric point5.99
Molecular weight26336.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01486
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.08|      24|      26|      81|     106|       1
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   81-  106 (37.75/24.69)	KKLNH.SLLvnFLDLIDLLVQC.PDSPR
  109-  134 (33.33/16.33)	EKVEDlSLL..FIHIHHLLNEFrPHQAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.78|      19|      22|       5|      23|       2
---------------------------------------------------------------------------
    5-   23 (33.02/17.97)	EAIQVSSLPLPPVQYINLY
   26-   44 (35.76/19.97)	ENVRRGRAPRPPLPIHDTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.89|      26|      28|     171|     196|       3
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  171-  196 (42.73/25.55)	QMLPD.TSELDSKLAINTDAMESVDNL
  200-  226 (44.16/26.60)	QQTPDpCNPCDRIMCKTIDDMISTNGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.16|      13|      14|     137|     150|       4
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  137-  149 (22.32/15.32)	LRVMMELQRRQRI
  153-  165 (21.85/ 9.59)	LRFQKHLEKVQEI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01486 with Med7 domain of Kingdom Metazoa
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