<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01484

Description Uncharacterized protein
SequenceMGDELPILKGILNGVVNYHNAPVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSPSPRPLVGPCKALSLEA
Length785
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.616
Instability index72.02
Isoelectric point8.12
Molecular weight85909.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01484
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.55|      25|      27|     301|     325|       1
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  298-  321 (41.93/13.44)	.EQQQQMQAQQQHQQQQQQTQH.....VIN
  322-  343 (41.77/13.37)	AQQPQQQQQQQQQQQQQQQQQQ........
  643-  672 (32.38/ 8.94)	ARSPQGSQGLLQCATSNYSTTRwpatsVIT
  677-  696 (36.48/10.87)	ARQQQQQQQQQQQQQQQQQQ..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.50|      30|      33|     420|     449|       2
---------------------------------------------------------------------------
  382-  398 (22.09/ 6.10)	....STC...SGE....V.ASLTE...............YHHVA
  399-  425 (28.56/ 9.78)	PPSG............HH.AS....SAPllaatlagglCPHRRR
  426-  457 (50.17/22.09)	ANSGSTS...SGDDELHR.ASLSKTPQP........pqCPRFRK
  458-  493 (27.69/ 9.29)	LDSPSDSgieSGTEKPDKpASSSASSAP.......tsvCSSPR.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.49|      69|      76|      17|      90|       3
---------------------------------------------------------------------------
   17-   86 (108.19/66.39)	NYHNAPVRFGrVPKREKARILAAMQQ..SSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKVAPIL
   94-  164 (113.30/58.16)	NYTACPPTLA.CPLNPNPQPLTGQQEllQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.35|      22|      57|     561|     582|       4
---------------------------------------------------------------------------
  561-  582 (41.02/19.25)	SPPARSPSSQAQASQCPQTASL
  624-  641 (34.73/15.10)	SPNA.SPSP...AEQCASTTTI
  707-  724 (29.60/11.71)	SP.ASSPRYLSAA...ATSSTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.17|      14|      41|     726|     739|       5
---------------------------------------------------------------------------
  726-  739 (23.71/13.69)	SPRPASSTAATLVL
  770-  783 (26.45/16.23)	SPRPLVGPCKALSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.84|      43|     318|     173|     219|       6
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  173-  219 (62.90/54.17)	DAQTNSMICLNgQVLKRESIHNSSNarfLMDSMFDFAERVNSLRLSD
  496-  538 (73.94/49.19)	DKEVEDMPVLK.RVLQAPPLYDTNS...LMDEAYKPHKKFRALRQKD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.07|      14|     318|     259|     276|       7
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  231-  246 (19.14/ 7.67)	IAADRPG....LRntELVER
  259-  276 (18.93/18.49)	LAQNHPQhpdiLR..ELLKK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01484 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATS
2) MMELQVDIADSQQPLNLSKKSPSPSPRPLVGPCKAL
3) PATSVITTTTGARQQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVL
294
746
666
658
781
739










Molecular Recognition Features






MoRF SequenceStartStop




1) IIHNYIMR
2) LNLSKK
3) YKPHKKF
610
760
525
617
765
531