<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01480

Description Uncharacterized protein
SequenceMSHVSFTTIRVSKNGVKMVAGPTEHGIQADVIFVIEGTAVNGAYLNDLKTNYLTPTLEYFSQGGIEDREYVSEQNSTTLYGIVVYHAADCLPAPCTETFGPYANPHKLLLVLEKLEMVGGKGECFANIGEGLATGLQCFEDLQLRREPNTAPQKHCILICNSPPYQTVIQESYKFAGHTIEQLATLYQERNINLSILSPRKIPALFKLFEKAGGDLQSSQTKNYAKDPRHLVLLRNYNLKERPVSPTIGGAVHNTSGTAAQIPLSPLQSNDSPNTNQVQQSIAQPTQSQGPPFRNPTPQNISSVHQTVVPMATAMNAGRPPYNPQISAPPTYHPTNVTARTSHPRWRQHFVPPGTTGPTNTQSSALIAQLNQPPPSIGLNVTPFGRMDVTNINVMAANAQQQQQQQQQQQQQLTQQQQLRLTQLQQLQQQQQQQQQQQQQQQNVQQQASMSITAQQTHGQAGQLTVSCVSQSVPTQVPQTVTASQTQASVSSVTQQQQVTHPQTQGTAGTVGPGPQISTPRERHTIWQGIIEWVEKAKTTADAQKQTRHLPCQVSANSKDGDPELKADTWPQKLIMQLMPKQLIGNIGGSYLKNSKSVLFHPTPCEALESLTKVMNSGFAGCVHFTFLQATTACDIKILILLYTAERRTYLGFIPNDQTGFVDRLRKVIQQQKTSHASMRQGQAGAAQGNAIAGPMPSTGTSQGGILMSQTNTMAMGGGQITQNVVSTNAPQQTLSSSAGPQNQLNMQSGGITGPQVAPASGTMIGQQRPPFDDIELARHQNLLKIQQLRQTLEAAQQQEAQYKSQLEINIQQNLEVAQQQEMQYKQQLEAQQAQRALNPAGMTNQQANAPRLMRPVSNIGLRHLLQQPQPPYRQVIGLQQQMVGPRGQMTTRPMAPGNPQNQQFEDVPNYDVFG
Length915
PositionUnknown
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.567
Instability index56.42
Isoelectric point8.99
Molecular weight100300.85
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01480
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.69|      27|      28|     400|     426|       1
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  413-  441 (44.77/13.46)	LTQQQQLRLTQLQQlqQQQQQQQQQQQQQ
  809-  835 (33.92/ 8.45)	INIQQNLEVAQQQE..MQYKQQLEAQQAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.87|      35|      36|     710|     745|       2
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  479-  505 (42.63/12.53)	QTVTAS..Q...........T....QASVSSVTQQQQV...THPQTQ
  710-  744 (61.32/25.52)	QTNTMA..MGGGQ......IT....QNVVSTNAPQQTLSSSAGPQNQ
  756-  802 (36.92/ 9.51)	QVAPASgtMIGQQrppfddIElarhQNLLKIQQLRQTLEAAQQQEAQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.85|      22|      22|     266|     287|       3
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  266-  287 (39.00/16.84)	PLQSNDSP.NTN.QVQQSIAQPTQ
  292-  312 (29.40/10.85)	PFR.NPTPqNIS.SVHQTVV.PMA
  313-  331 (22.45/ 6.52)	TAMNAGRP.PYNpQIS...APPT.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.44|      21|      34|     352|     372|       4
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  353-  373 (36.18/15.71)	PGTTGPTNTQSSALIAQLNQP
  840-  856 (30.62/12.08)	PA..GMTNQQANA..PRLMRP
  857-  871 (22.64/ 6.88)	VSNIG.....L.RHLLQQPQP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.15|      24|      26|     541|     566|       5
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  541-  566 (39.52/25.88)	ADA..QKQTRHL.PCQVSANSkdGDPELK
  567-  593 (33.62/16.15)	ADTwpQKLIMQLmPKQLIGNI..GGSYLK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.48|      16|     222|     444|     474|       6
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  459-  474 (28.32/ 7.96)	GQAGQLTVSCVSQSVP
  682-  697 (29.17/ 9.31)	GQAGAAQGNAIAGPMP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.01|      13|      28|     199|     211|       9
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  199-  211 (22.34/13.59)	PRKIPAL..FKLFEK
  228-  242 (16.67/ 8.39)	PRHLVLLrnYNLKER
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.60|      35|     764|     105|     141|      13
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  105-  141 (52.57/35.51)	PHKLLLVLEKlEMVGGKGECFAN.IGEGLATGLQcFED
  872-  907 (62.03/32.90)	PYRQVIGLQQ.QMVGPRGQMTTRpMAPGNPQNQQ.FED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01480 with Med25 domain of Kingdom Metazoa
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