<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01479

Description Uncharacterized protein
SequenceMLLESRGGLAGRKRNGLTVSSFGGGGGGGGGGGGGGGGGAGCGGSEEDDEESRHLFLGRKMQTEGSAASTAVSTGLSPGCTRDDGDDSSTPSPNASLLNNLNNNCNSNRQCATDFSIAAIMARDSRQQQHQQQPQQLSPHHSQTSPSQQQQQQQQQQQQQQQQQQQQQQQSHHHRQLQQQAVGGGKLHQHEREPSVSGVVRGNSGGGSAAPPAPIQEAILAEDDPETDDAGSSSGKVASPVNPLLQERSNCEELRHVACHLETKDLWDKFNELGTEMIITKTGSSWLVAGKADPPAPARLYVHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPDSGTAKPITDLEKEPHKTFIFPEAIFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFERETMESMLAEQQSLRFPHRLPFEMDQLQATAVSNLSLEEKALWAARSQMLLRAAAAVAVSPYAQLVGPAALVYPGASSAGTSHQQHQQQHQQHQQQQQQQQQQQQQLGHLWWASSIGPTLFAAAHHHHQQQQQQQQQQQQQQQLAAGSSTGPAAPRPLYPSALALAHHRFSPYHAAKSAAASLGPSLSPSPSSRRATPSPTDSLGRDVRDLSPS
Length629
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.822
Instability index75.29
Isoelectric point6.88
Molecular weight68143.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01479
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     362.68|      91|     349|     134|     243|       1
---------------------------------------------------------------------------
  134-  231 (155.30/74.55)	PQQL.SP......HHSQTSPSQQQQQQQQQQQQQQQQQQQQQQQSHHHRQLQQQAVGggkLHQHEREPSVSGVVRGNSGGGSAApPAPIQEAilAEDDPeTDDAG
  483-  532 (71.19/17.63)	PAALvYP......GASSAGTSHQQHQQQHQQHQQQQQQQQQQQQQLGH.LWWASSIG................................................
  533-  620 (136.20/42.54)	......PtlfaaaHHHH....QQQQQQQQQQQQQQQLAAGSSTGPAAPRPLYPSALA...LAHHRFSPYHAAKSAAASLGPSLS.PSPSSRR..ATPSP.TDSLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.51|      10|      48|       4|      13|       2
---------------------------------------------------------------------------
    4-   13 (18.57/ 9.23)	ESRGGLAGRK
   20-   29 (18.13/ 8.84)	SSFGGGGGGG
   51-   60 (17.81/ 8.54)	ESRHLFLGRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.92|      13|      35|      37|      49|       3
---------------------------------------------------------------------------
   37-   49 (25.72/15.12)	GGGAGCGGSEEDD
   75-   87 (26.21/15.55)	GLSPGCTRDDGDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.52|      16|      21|     405|     424|       5
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  405-  424 (19.39/23.29)	FRDSSRLtDFEretMESMLA
  429-  444 (31.13/19.31)	LRFPHRL.PFE...MDQLQA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01479 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FAAAHHHHQQQQQQQQQQQQQQQLAAGSSTGPAAPRPLYPSALALAHHRFSPYHAAKSAAASLGPSLSPSPSSRRATPSPTDSLGRDVRDLSPS
2) MLLESRGGLAGRKRNGLTVSSFGGGGGGGGGGGGGGGGGAGCGGSEEDDEESRHLFLGRKMQTEGSAASTAVSTGLSPGCTRDDGDDSSTPSPNASLLNNLNNNCN
3) NRQCATDFSIAAIMARDSRQQQHQQQPQQLSPHHSQTSPSQQQQQQQQQQQQQQQQQQQQQQQSHHHRQLQQQAVGGGKLHQHEREPSVSGVVRGNSGGGSAAPPAPIQEAILAEDDPETDDAGSSSGKVASPVNPLLQERSN
4) PGASSAGTSHQQHQQQHQQHQQQQQQQQQQQQQLG
536
1
108
489
629
106
250
523










Molecular Recognition Features






MoRF SequenceStartStop




1) LALAHHRFSPYHAAKSA
2) MLLESRGGLAGRKRNGLTVSSFGGG
578
1
594
25