<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01474

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDLLYTVNRKVAPKPFLNQESLYEGQSLCSLSSRNIVAFTTTTELDDNNGKTWGSHVYVCDLNMPWHTHKVLSNKNIITALEWDLSGDKLVVADSIGNIQLWMFKDHVLNDWVLIGSTCFVGEHILGAAWFHNGKKTGLVTEKKDSIHYSEKFNHLPFAPSVRQFGGRAAEGVLVVSTTGMVGAVMITKDFQNPICSSTESLGSTRHRITAVDLCYGKNGHILVAISSGNIYLPIRCYRVLVRKNDDKCTITSQALPSFFLQDGAPKDNTYTSVTHLKFVVREDADSLVIAVNSDSGGIVEVWELREKSQPVHKLFQPKTLEPFKTIVVWQHQSQYRCSSPIAAIATTKLSIVTTLPPPSYVVVALADSSIHCLSRDCLKEISFSSLNMAWRPDEPNNKYFKSSVSITNIDISWLGCVLLACDTRGNLYLYKLLPDGGPSLTLSYACTLLEYCLVTGLDWLDVLLCLRSSMIEPLCDRLDVSFNRQLQPIQQYHYIQFLCIKISLYRMLVSGQSKAADLSSLLMIHSVATAFKSLLRPSDLISHDKGPAESLATVINEAITDVDKVLLHLDPKEFTVEPSTLQSLQQLIQWVADLALNLLARLPEQRLQMKSGGYELLKDHKALNTLRELLVIIRIWGLLRPSCLPVFLRSADNLDVLALLFRLLSKLVQPNGDGQTQQIDDGLIDDCCLLPNQIMIPQLHQGNSITAIATPVLFYQSFPLQLEYSIEPEQLLFVPEFNPIEGCMHSGQIVDGIRHLYLGKQPLLVKQCTRCVGKAQVQNMTRTAAIRAWDQRWARACRCGGIWRIHKACS
Length811
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy0.027
Instability index47.15
Isoelectric point7.26
Molecular weight90699.96
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.62|      46|      90|     562|     613|       1
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  562-  613 (65.74/53.28)	DVDKVLLHLDPKefTVEPSTLQSLQQliqwVADLALNLLARLPEQRL..QMKSG
  656-  703 (76.88/45.17)	DVLALLFRLLSK..LVQPNGDGQTQQ....IDDGLIDDCCLLPNQIMipQLHQG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.49|      59|      90|     350|     413|       2
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  350-  413 (88.40/83.84)	LSIVTTLppPSYVVVALAD..SSIHCLsRDCLKEISFSSLNMAW.RPDEPNNKYfkSSVSITNIDIS
  443-  504 (97.10/70.69)	LSYACTL..LEYCLVTGLDwlDVLLCL.RSSMIEPLCDRLDVSFnRQLQPIQQY..HYIQFLCIKIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.25|      67|     129|      61|     134|       3
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   61-  134 (113.49/93.78)	DLNMPW..HTHKVLSNKNIITALewDLSGDK...LVVADSIGNIQLWMFKDHVL...NDwvligSTCFVGEHILGAAWFHNG
  190-  264 (105.77/68.81)	DFQNPIcsSTESLGSTRHRITAV..DLCYGKnghILVAISSGNIYLPIRCYRVLvrkND.....DKCTITSQALPSFFLQDG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.29|      30|     106|     506|     541|       4
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  506-  541 (42.17/38.02)	YRMLvsGQSKAAD.LSSLLMIHSVatafKSLLRPSDL
  615-  645 (50.12/29.00)	YELL..KDHKALNtLRELLVIIRI....WGLLRPSCL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01474 with Med16 domain of Kingdom Metazoa
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