<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01472

Description Uncharacterized protein
SequenceMEQQQQQQQLQTALTAIKVLRSSVGQVFDSLGNGLRADHGEENKENKYLLELQELLTTVNVNLRDVEQAVSSLNPPPGAFHLASTTYLSQETTQERQALYSTLVNSYKWTDKVHEYSNVAQSILSQNSLKRSYNTTSRAKRGRIQTSNHNVPQQQVDSLIATFDRLFSDMTVSVSRPFASNAVLHVTLGHVLKGVIAFKGLMIEWVVVKGYGETMDLWTESRHKVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWFYSLNNLFSDPCKRCGLHLHSALPPTWRDFRTLEPYHQECKP
Length298
PositionTail
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.09
Grand average of hydropathy-0.424
Instability index48.45
Isoelectric point8.67
Molecular weight33956.03
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01472
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.31|      10|      25|     103|     112|       1
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  103-  112 (18.97/12.95)	LVNSYKWTDK
  129-  138 (17.34/11.28)	LKRSYNTTSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.40|      21|      26|     248|     269|       2
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  248-  269 (37.13/26.58)	LAVRSFM..TW..FYSLNNlFSDPCK
  273-  297 (32.27/18.41)	LHLHSALppTWrdFRTLEP.YHQECK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.77|      21|     101|      37|      71|       3
---------------------------------------------------------------------------
    9-   36 (26.16/34.21)	QLQTALTAIKVLRSSVGQvfdslgnGLR
   51-   71 (32.62/11.88)	ELQELLTTVNVNLRDVEQ.......AVS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01472 with Med27 domain of Kingdom Metazoa
Unable to open file!