<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01471

Description Uncharacterized protein
SequenceMQRYCTELTERLLKSLDKEYNVIDMGAVVDVVTALEKTAITKEVLEVTRLGKYINELRRKTSNDALAKRAKDLVRRWRDMVLPSAHSTPQPTPADTAPPALNGAKPHSPALRCFKPQSPALRGLIPPQSPLLRDSTPLRVLSPVLSVHSDHSHSPNASSNKQSITVTSNHRTSSDVPPMLGSSSQHHSTEAVPRTHSSNKRLRKDDFKDQHNYQHHDSDSITESEPFVKKQRLNGENISGNLNMQVPSPIFKERISDQFTESSTDPENSGPKKRGRKKGSKSVKKQPILEDRVKEKLASISRNPKLKTTQELLADLRARGTNSSINSSALPSQSVESSSMEEVLRNSNEQVSKFLRCPQNNLSHRNTVSEVSAESRLKPTENCHDVPSKCDESGVVFKEKSVTNVQKNQPEQCRDLTVEEILAKLPPIDPNSIDWSECEIESTEDRNSSEYPPRQVTAEDIERLHTQCVEGLNGNFQPKLSSLTSSFNEKSDTKEDVRDINGVNNVYSQPDEEFREWHQMLARPSYNGQILHILPYVIID
Length540
PositionUnknown
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.856
Instability index57.71
Isoelectric point7.66
Molecular weight60633.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01471
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.53|      28|      28|     185|     212|       1
---------------------------------------------------------------------------
  150-  181 (36.11/17.57)	DHsHS....PNASSNKQSitvtSNHR.TSSDVPPMLG
  185-  212 (50.01/26.98)	QH.HS....TEAVPRTHS....SNKRLRKDDFKDQHN
  214-  243 (37.40/18.44)	QH.HDsdsiTESEP..FV....KKQRLNGENISGNLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.34|      15|      19|      93|     111|       2
---------------------------------------------------------------------------
  104-  121 (23.11/14.85)	AKPHSPAL...rcfKPQSPAL
  125-  145 (20.22/ 9.14)	IPPQSPLLrdstplRVLSPVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.10|      19|      37|     249|     267|       3
---------------------------------------------------------------------------
  249-  267 (32.40/18.19)	PIFKERISDQFTESSTDPE
  287-  305 (29.70/16.10)	PILEDRVKEKLASISRNPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.89|      22|      29|     452|     478|       4
---------------------------------------------------------------------------
  452-  478 (33.71/30.03)	PPRQVTAEDIERlhtqcVEGLNGNF.QP
  488-  510 (34.18/18.36)	NEKSDTKEDVRD.....INGVNNVYsQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.05|      30|      36|     339|     371|       6
---------------------------------------------------------------------------
  339-  371 (46.25/43.30)	SMEEVLR...NSNEQVSKflrCPQNNLSHRN.TVSEV
  372-  405 (39.79/27.59)	SAESRLKpteNCHDVPSK...CDESGVVFKEkSVTNV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01471 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RDMVLPSAHSTPQPTPADTAPPALNGAKPHSPALRCFKPQSPALRGLIPPQSPLLRDSTPLRVLSPVLSVHSDHSHSPNASSNKQSITVTSNHRTSSDVPPMLGSSSQHHSTEAVPRTHSSNKRLRKDDFKDQHNYQHHDSDSITESEPFVKKQRLNGENISGNLNMQVPSPIFKERISDQFTESSTDPENSGPKKRGRKKGSKSVKKQPILEDRVKEKLASISRNPKLKTTQELLADLRARGTNSSINSSALPSQSVESSSMEEVLR
78
345










Molecular Recognition Features






MoRF SequenceStartStop




1) ILHILPYVIID
2) LVRRWRDMVLP
3) PIFKERI
530
73
249
540
83
255