<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01470

Description Mediator of RNA polymerase II transcription subunit 18
SequenceMSAPISTAMDSLSAAIRSNIIPNQEYLLQGSVLDSAVEVLLHRLRGLCDNVDTGPETFNDHEMCFSIRGSEQPLLLRVRRALDYQDMPWQLRYIGQPELGDKSRPTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMGQQGKIPESMEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLKPLVQLEKIDYKRLVH
Length216
PositionHead
OrganismApis mellifera (Honeybee)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.171
Instability index45.08
Isoelectric point5.69
Molecular weight24414.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01470
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.06|      24|      25|     154|     178|       1
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  154-  178 (37.16/31.88)	IFKMGQQGkIPESMEAISQSY..LVEL
  181-  206 (34.90/24.52)	LAPSGQDA.IAEDMRIFAEQLkpLVQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.12|      23|      27|      61|      83|       2
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   61-   83 (42.42/28.79)	HEMCFSIRGSEQPLL...LR...VRRALD
   85-  113 (33.70/21.59)	QDMPWQLRYIGQPELgdkSRptiVRSSLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01470 with Med18 domain of Kingdom Metazoa
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