<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01462

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMQQREEKQLEASVDSLISLVALTKNALQSFIYKLENEYERLTWPNVLDNFGLLSGQLNTINKMLKNEKTPSFRSQVIIPLVLSQKPDDDLTVLTEQRVPVFSHEIVPDYLRTKPDPEVEEQEKQLSTEAARIGPDVAQKQIQALNKMCSNLLEKLNNPRDDRDAESAASRLNKPSFNPGDTNALVAAVAFGKGLSKCRPPGPMAPGHPGQGPMMSGGPTLQQVTIGGGGGQQAGMGGPVAPQQQGQPGKMPSSIKTNIKSASASMHPYNR
Length270
PositionHead
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.04
Grand average of hydropathy-0.572
Instability index48.26
Isoelectric point7.73
Molecular weight29306.97
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364144

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01462
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.89|      10|      19|     201|     218|       1
---------------------------------------------------------------------------
  205-  214 (23.90/ 9.47)	PGHPGQGPMM
  226-  235 (18.99/ 6.45)	GGGGGQQAGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.97|      25|      26|      64|      89|       2
---------------------------------------------------------------------------
   64-   89 (39.67/30.91)	LKNEKTPSFrSQVIIPLVLSQKPDDD
   93-  117 (46.29/31.20)	LTEQRVPVF.SHEIVPDYLRTKPDPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.14|      19|      19|     161|     179|       3
---------------------------------------------------------------------------
  160-  178 (33.27/22.43)	DDRDAESAASRLNK...PSFNP
  179-  200 (28.87/18.59)	GDTNALVAAVAFGKglsKCRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.75|      18|     102|     133|     151|       4
---------------------------------------------------------------------------
  133-  151 (29.28/17.34)	GPDVAQKQIQAlNKMCSNL
  237-  254 (35.47/17.52)	GPVAPQQQGQP.GKMPSSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01462 with Med8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSKCRPPGPMAPGHPGQGPMMSGGPTLQQVTIGGGGGQQAGMGGPVAPQQQGQPGKMPSSIKTNIKSASASMHPYNR
2) MCSNLLEKLNNPRDDRDAESAASRLNKPSFNPGDTNALV
194
147
270
185










Molecular Recognition Features






MoRF SequenceStartStop




1) SSIKTNIKSASASMHPYN
252
269