<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01457

Description Uncharacterized protein
SequenceMEPSTKPGPSQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGFTADNLVKIIRDRGIHFSVVAPRKLPALRALFEWASPVTGAVEPHPDYSQDPFHMVLVRGISLPVSAGGGPPHKPVLPPQPPPGQSVVGPSQAPPPINPAHSYQNQPALTPAQVAAQMAVDAANNQKNRFTGIASSPFQNQPISSVPGPKHGQPSLPTVTTVNQLTMPQQVPPNPQQAVPPPGQLVGSQQPQPNQPTAPSAQPNIAGVPGGQVTANPMGQPQGMANKVMAWTGVLEWQEKPKASSMDSTKLTRSLPCQVFVNQGENLNTDQWPQKLIMQLIPQQLLTTLGHLFRNSRMVQFLFTSKDMDSLRGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRAQLGGAGVPMQPNQVPTNQNFLNRAPGPIPVSHGNVQQQSVVVGMPPVSQVSIMEEQQRPSSMMTMRAAGPTNQQPPVSGAPPNQVAQGGQPQPQGSILRLPNPGANPQLRSLLLSQQQPVRATESCFFMLNFQIPACRI
Length680
PositionUnknown
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.07
Grand average of hydropathy-0.260
Instability index49.92
Isoelectric point8.72
Molecular weight73275.95
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01457
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     181.13|      33|      33|     235|     267|       1
---------------------------------------------------------------------------
  201-  252 (38.89/ 9.52)	...AVEPHPDYS....QD...PfhmvlvrgislpvsagggpphkPVLPPQ......PPPG.....QSV.VGPSQ
  253-  273 (34.08/ 7.45)	APPPINPAHSYQ....NQ...P..............................................aLTPAQ
  276-  311 (38.15/ 9.20)	AQMAVDAANNQK....NRftgI......................ASSPFQ......NQPI.....SSV.PGPKH
  331-  349 (36.20/ 8.36)	VPP..NP..........Q...Q......................AV..........PPPG.....Q.L.VG.SQ
  614-  658 (33.82/ 7.34)	QQPPVSGAPPNQvaqgGQ...P.........................QPQgsilrlPNPGanpqlRSL.LLSQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.26|      38|      38|     518|     555|       6
---------------------------------------------------------------------------
  518-  555 (68.21/34.76)	DQSGFVNGIRQV....ITNHKQVQQHRAQLGGAGVPMQPNQV
  558-  576 (34.85/14.26)	NQN.FLN...................RAP..G.PIPVSHGNV
  577-  610 (38.20/16.32)	QQQSVVVGMPPVsqvsIMEEQQRPSSMMTMRAAG........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.37|      17|      51|     313|     329|       7
---------------------------------------------------------------------------
  313-  329 (32.75/13.52)	QPSLPTVT....TVNQLTMPQ
  362-  382 (23.62/ 7.91)	QPNIAGVPggqvTANPMGQPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.31|      10|      38|     457|     466|       8
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  457-  466 (17.63/10.46)	RMVQFLFTSK
  498-  507 (14.68/ 7.54)	RVLMLLYSSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01457 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGGPPHKPVLPPQPPPGQSVVGPSQAPPPINPAHSYQNQPALTPAQVAAQMAVDAANNQKNRFTGIASSPFQNQPISSVPGPKHGQPSLPTVTTVNQLTMPQQVPPNPQQAVPPPGQLVGSQQPQPNQPTAPSAQPNIAGVPGGQVTANPMGQPQGMAN
2) KQVQQHRAQLGGAGVPMQPNQVPTNQNFLNRAPGPIP
3) PVSQVSIMEEQQRPSSMMTMRAAGPTNQQPPVSGAPPNQVAQGGQPQPQGSILRLPNPGANPQLRSLLLSQ
228
534
587
386
570
657










Molecular Recognition Features






MoRF SequenceStartStop




NANANA