Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MSSCFVPNGASLEDCHSNIFSLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRCLAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHNELSSEENGEWESGLSYECRTLLFKAIHNLLERCLMNRGFVRIGKWFVKPYQKEEKIINKSEHLSCAFTFFVHGDSNVCTSVEIAQHQPLQRLGEEHLSLAQQSSSPLQVILSPYGLNGTLTSQAFKMSDHPTQKLIEEWRQFYPICPNLKEVPEEKMEDADWEDDSLAAVEVLVAGVRMVYPSCLVLLPLSDLPAVVPQGSANTPGMQSGAHQGQAAHRDSAMSSVTLTPPTSPEEAHTDYQPAQRWLKMSSGSDCYSSNNTLHGGKIPRRLSSQMVETVWQEYNINRAGNKRKFTTLTNGACEEEPDRSRLWDFVEPTHRPSCNCSRPKNQKQRSSSTSGYPPSSGQPPQPAAKHKLGEKLEKGEKQQRRPQTPFHHRNSVSEEQSMETQTQRLCPRPQEEGSYPSLHHADTAPPKAPSLHAHGPPADLVGSPPPPPLSPRPCDHVDGELTPSGAKNSSTPIHQAFYPPSVEPCLMPQKGSTEEPQPDSAAYPSNYNETLEPTLFTGSAIKPGEDSTHNPWKYFNLPRKKASSFLTPQLPVDKIRDDSSGGSETVVSVTELMCNSSRPLKVSQELVRTYAQRRNSHLGSSAGDGEHGDESDPYAFVDGDDEFRITEKRDKNGPEKDGNKKQKLDDGGMAATSDDGQGQSSCKPSASTSLIHEKDLVVSLSDLEKMFNSDEDEQEPGSKRAGTGNDDKTSLKEPKPERLDPLSSSDLMMMYPTPPSLDQNGYSPGNSGTKDGLETGAGLALLDSSQLSSHFKIEVEEGFCSPKPSEIKDFSFVYKPETCQSIIGCSMYAPLKTLPSQCLLPVKLPEDCVYTPSWTMGKMELMPPVSTVSLLTKDSNVPSVEPDYNQPFTPQTNTPFLPGSAPPSNSGPGILPSPATPRFSVPTPRTPRTPRTPRGPSSVQGSLKYENSDLYSPASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNIRGADVGVYLKDNGEDQYPCTCGFSAVANRRFGQSAGLFLEDELDVVGRGSDAGRDTERRFEELRGSLKEKPPDELILLLQDQCTNPLAPMAGVEWPKPSAVTVAAPSSFLRVEERDCYNDCYMALEHGRQFMDNMSGGKVDETLVKSTSLHQWPKCKSADISKLYSQDVLRVLLSLQPALQDTIQKKAVRSWGVQGPLTWQQFHKLAGRGTYGTDESPEPLPIPTFLVGFEYDFVVLSPFGLPYWEKLLLDPFGSQRDVGYVIICPENQALLRGAKTFFKDLSVMYETCQLGQHKPICKSHPEGVLTVGSPEGRSTTEQPLSDWFLKMAARESNNEAFHKLKLFAQVCRYDLAPNLSELLLDSSLLSQRNPTKPAPQTSTSSSASSGLQSTNTTSINSSQPAQVNSTPPPSSSSSSSSSGSQTNGAMASGKPGSYMPFGSGGLQGSTTQNGPQQTNSQSTGGLGDSGSSQPQVSAETQESTMERDKVGKPTDGESHAVSYPPAIVVYIVDPFSYENADTEVHSSTYTLGLLRCFMEMLPFLPAHIRNAVSVQIVPCQYLLQPVHSGDRHIYSQHLKSLAFSVYTQCRRPLPNSTNFKALTGFGPGLALDMALKNPERPECLRLYTPSFILAPVKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDQHGELLESCIISIDVPNRARRKKSSARRVGLQKLWEWCVGLVQVTSLPWRVVIGRLGRMGHGELRDWSILLSRTNLQSLSKRLKETCRMCGISAADTPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQVINTNTSEPIEISFNHINPEEGMGLFELFVNDMDPELINILPNSPTTSPVHSPGHHYHHGEAGKGQGADRMESHEEALSILQQPMALGYFISTAKAGPLPDWFWSACPEAQNQCPLFLKASLHLHVSSVQSDELLHGKHSHPLDSNCTSEVLRFVLEQYNALSWLTCNPATQDRRSCLPVHFVVLTQIYNFIMNML |
Length | 2108 |
Position | Middle |
Organism | Poecilia formosa (Amazon molly) (Limia formosa) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.483 |
Instability index | 57.74 |
Isoelectric point | 5.66 |
Molecular weight | 231938.34 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP01450 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 145.21| 31| 32| 1439| 1470| 1 --------------------------------------------------------------------------- 809- 842 (39.18/15.26) LSSSDLMMMYPTPPSlDQNGYSpgnSGTKDGLET. 1439- 1469 (56.00/27.24) LDSSLLSQRNPTKPA.PQTSTS...SSASSGLQST 1474- 1501 (50.02/24.03) INSSQPAQVNST.P..PPSSSS...SSSSSGSQ.T --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 110.99| 31| 33| 945| 976| 2 --------------------------------------------------------------------------- 530- 580 (26.70/ 6.08) .....SPPPPPLSPRPcdhvdGeltpsgaknsstpihqafypP..S.VEP.CLMPQKGST 960- 993 (45.49/18.85) NTPFLPGSAPPSNSGP.....G..................ilP..SpATPrFSVP.TPRT 1014- 1043 (38.80/12.33) NSDLYSPASTPSTCRP...........................lsS.VEP.ATVPSIPE. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.60| 12| 35| 232| 243| 3 --------------------------------------------------------------------------- 232- 243 (25.48/18.03) LIEEWRQFYPIC 270- 281 (23.11/15.49) LVAGVRMVYPSC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 356.12| 111| 207| 1081| 1201| 4 --------------------------------------------------------------------------- 1081- 1201 (175.79/119.25) ADVGVYLKDNGEDQYP...CTCGF..SAVANRRFGQSaglFLED.ELDVVGRGSDAGR..DTERRFEELRGSlKEKPPDelILLLQDQCtnPLAPMAGVEWPKPSAV.TVAAPSSflRVEERDCYNDCYM 1285- 1404 (180.33/97.65) AGRGTYGTDESPEPLPiptFLVGFeyDFVVLSPFGLP...YWEKlLLDPFGSQRDVGYviICPENQALLRGA.KTFFKD..LSVMYETC..QLGQHKPICKSHPEGVlTVGSPEG..RSTTEQPLSDWFL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.84| 14| 36| 30| 45| 5 --------------------------------------------------------------------------- 30- 45 (23.99/22.77) WRRFvwQGPTSSPI.LF 69- 83 (24.85/14.09) WRRH..HTPGRRELwLF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 121.73| 34| 82| 683| 723| 6 --------------------------------------------------------------------------- 683- 719 (54.12/32.69) SHLGSSAGDGEHGDESDPYAFVDGDDEfriTEKRDKN 734- 753 (24.58/ 7.98) GGMAATSDDGQGQSSCKPSA................. 1537- 1565 (43.03/20.18) ....STGGLGDSGS.SQPQVSAETQES...TMERDKV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 131.69| 41| 280| 474| 523| 7 --------------------------------------------------------------------------- 417- 460 (72.63/32.40) HRPSCNCSRP.KNQKQ....RSSSTSGYPP...SSGQPPQPAAKHKLGeklE 475- 523 (59.06/46.13) HRNSVSEEQSmETQTQrlcpRPQEEGSYPSlhhADTAPPKAPSLHAHG...P --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 136.23| 44| 1057| 175| 222| 8 --------------------------------------------------------------------------- 175- 222 (67.55/55.65) CTSVEIAQ..HQPLQRLgeeHLSL..AQQSSSPLQVILSpYGLNGTLTSQAF 1234- 1281 (68.68/43.19) CKSADISKlySQDVLRV...LLSLqpALQDTIQKKAVRS.WGVQGPLTWQQF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.34| 16| 207| 644| 666| 9 --------------------------------------------------------------------------- 644- 659 (28.03/29.05) DDSSGG..SETVVSVTEL 1211- 1228 (24.31/ 6.73) DNMSGGkvDETLVKSTSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 158.68| 49| 207| 1668| 1716| 10 --------------------------------------------------------------------------- 1668- 1716 (84.98/45.57) LPNSTNFKALTGFGPGLALDMA.LKNPERPECLR.LYTPSFILAPVKDKQT 1868- 1918 (73.70/38.52) MPDSVSTGSVFGRSTTLNMQTSqLSTPQDTSCTHiLVFPTSAMVQVINTNT --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KHKLGEKLEK 2) NPWKYFNLPRKKASSFL | 452 617 | 461 633 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab