<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01439

Description Uncharacterized protein
SequenceMTTVSATPQQMKDRLLQAIDSQSNIRDMAVVLEVIACLEKYPITKEALEETRLGKLINDVRKKASNEDLAKRAKKLLRNWQKLIEPGPTGPASVPGSTNGSSHPCRTELSPADLSVSGKGVPEVKTRNDVHNTYSPKAEKSSNRKRRAEQRDSGVYLPEKISRMSSYDNSVSPPTNGITGSPETLLDQEVVPSPDRSRIDNLENDKVNRIPINAVKPRPSSPGAAKPLSTSSLIKVAVMQQQARLDEGGGYQARSPRSVTSSPRSAKQDSVSKRSSAFAAKGTPIPSPSSRDSPLPFSHSVSSPGPTSYAEKVQHSFHRSSVPPAASSDVPSHCPTQDVSVVPESPSVSPSPLLPQLNSDPHRSTFEGTTAVSDDMDGTAVQNSEHKRRKYRPRDFSVNLDGQKVEDSTKPVRLKERRITFDPVTGQIKPLVHKEPSQSEDVPTPDPAESRQRAQSIVPQPTATTSAPGPSPAPGAGPNPFHQTNWKELSRNEIIQSYLNLQSNVLTSSGVQAPSAHFFMSEYLKREEQQSKELRMSHVLQSDCLTGDLPGISRDITEDDLDRIHTQNWPGVNGCYDTKGAWYDWTECISLDPHGDESKLNILPYVCLD
Length609
PositionUnknown
OrganismPoecilia formosa (Amazon molly) (Limia formosa)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.04
Grand average of hydropathy-0.773
Instability index71.94
Isoelectric point8.04
Molecular weight66583.43
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01439
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     441.41|      88|     125|     112|     199|       1
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  112-  191 (121.09/56.53)	..........................ADLSVSGKG.VPEV...KT......RNDVHNTYSPKAEKSSNR....KRRAEQRDSGVYLP.EKIS......RMSSYDNSVSPPTNGITGSPETLLDQEV.....V
  192-  271 (96.38/43.48)	PSPD....RSRI...........dnlENDKVNRIP.INAV...KP......RPSSPGAAKPLSTSSLIKvavmQQQARLDEGGGYQA.R..................SP..RSVTSSPRS.AKQDS.....V
  286-  358 (95.81/43.18)	PSPS.....SRD..........splpFSHSVSSPG..PTSyaeKV......QHSFHRSSVPPAA.SSDV....PSHCPTQDV.......................SVVPESPSVSPSP..LLPQ.L.....N
  359-  442 (80.20/34.94)	SDPH....RSTF............egTTAVSDDMD.GTAV...QN......SEHKRRKYRP..................RDFSVNLDgQKVEdstkpvRLKERRITFDP....VTGQIKPLVHKEPsqsedV
  443-  523 (47.93/17.90)	PTPDpaesRQRAqsivpqptattsapGPSPAPGAGpNPFH...QTnwkelsRNEIIQSY...LNLQSN.........VLTSSGVQAP.SAHF......FMSEY.............................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01439 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) WQKLIEPGPTGPASVPGSTNGSSHPCRTELSPADLSVSGKGVPEVKTRNDVHNTYSPKAEKSSNRKRRAEQRDSGVYLPEKISRMSSYDNSVSPPTNGITGSPETLLDQEVVPSPDRSRIDNLENDKVNRIPINAVKPRPSSPGAAKPLSTSSLIKVAVMQQQARLDEGGGYQARSPRSVTSSPRSAKQDSVSKRSSAFAAKGTPIPSPSSRDSPLPFSHSVSSPGPTSYAEKVQHSFHRSSVPPAASSDVPSHCPTQDVSVVPESPSVSPSPLLPQLNSDPHRSTFEGTTAVSDDMDGTAVQNSEHKRRKYRPRDFSVNLDGQKVEDSTKPVRLKERRITFDPVTGQIKPLVHKEPSQSEDVPTPDPAESRQRAQSIVPQPTATTSAPGPSPAPGAGPNPFHQTNWK
80
487










Molecular Recognition Features






MoRF SequenceStartStop




1) KRAKKLLRNWQKLIE
71
85