<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01420

Description Mediator of RNA polymerase II transcription subunit 6 (Fragment)
SequenceGRARVCFPATEGRCSPYRTFKEISKTKAKEEPGSVFQRRRVDVLLTELSKKFPPKLPSPPQLEKQTTEEAVKVEPKVEVKTEKVDTPATTVVATTTTAAATVTAAVLGTTTATTTSATPPPPTTTAAASVVQRTAMKPP
Length139
PositionHead
OrganismStegodyphus mimosarum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Araneae> Araneomorphae> Entelegynae> Eresoidea> Eresidae> Stegodyphus.
Aromaticity0.04
Grand average of hydropathy-0.433
Instability index49.32
Isoelectric point9.78
Molecular weight14794.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01420
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.57|      17|      26|      86|     102|       2
---------------------------------------------------------------------------
   86-  102 (30.87/12.24)	TPATTVVAT....TTTAAATV
  110-  130 (24.70/ 8.53)	TTATTTSATppppTTTAAASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.25|      10|      18|      46|      55|       3
---------------------------------------------------------------------------
   46-   55 (18.41/10.19)	TELSKKFPPK
   67-   76 (16.84/ 8.78)	TEEAVKVEPK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01420 with Med6 domain of Kingdom Metazoa
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