<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01409

Description Uncharacterized protein (Fragment)
SequenceMVVADQGSWQADVVFVIEGTANLSPYVESLKMNYIIPTLEYFNGAPADDRDCGCDANCTMYALVIFMAADCAPETAATCFAPTASTHKFLSWLDKVMFIGGAGESHSHIAEGLSTALQVFDDFQNLRESSITTQKHCILICNSPPYPIPALESYAYSGLMTEQLAALMAERQINFSVLSPRKIPMLFKLYEKAGGDLQHALAKNYAKDRRHLVLLRGFQLQERPMSPPSLDSKSSVPPNSSVCSPPATGQKRPATNSPPHPREAPAFKQPATQNNYSGMDWPSSESPASALSSQNQVPSSIQAPGSGQSPLNYGQGSMPGQPNQALPQRPGIPTPPASHLSSLNQPNPPNVTITNKGPPTQHTEGIRPPRGHSPVPACGPRMSWNQPAAPSSPVSTSPTTSVLANQLNMAPSNMPLRHNNPQLQSNQAVSSIVSQSQSTMNQAQSVLNPNNALRGNLPNIGLRLTQNTSPGPVPAAGPNALTVQLNQHQSFSQNSQQPQQQSASMANSMPSSIQTKLGNATSGNQLIPSQGQTITTAPSSNMPLQSGPGIMPMSQGTSQQSQPSTNPTVATKDRRTIWQGILEFHEKSVPPQSQAQAQRVSHSLSCTFSSVVTNGESDVNADKWPNRLMLQLIPRQLIVVANLFNPLKTAARHVLIHFNQESEALSKLCKTMSSGLVGCIQFPPTCDIRIMVVIYMQDKRIYMGFIANDQDGFFNSIRQMYENQRKQQQQKQQRMQQQQLGNVTSSDNIGLQSTNTPNQNMMITQPASGNMNASNSQINPRMPINQQQVAQNTPAPAQAPNAGMVHSTTMNQQQPSLSQAARLSQLEAARQQNLLKIQQLQQTLEAAQQKELQYKAAQEQQQQQQQQQQQQQMIERQNTIRHLQQQLQHQQQQLAQQQQSIQMQQVSQQNSHNPQLRNLLQQQAQQMRRQQHQMLMQQHPQGIRPQLPGNIPQGGIGSSVGQQQQSQQQPQQQSWGDSAILDLLPP
Length986
PositionUnknown
OrganismStegodyphus mimosarum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Araneae> Araneomorphae> Entelegynae> Eresoidea> Eresidae> Stegodyphus.
Aromaticity0.04
Grand average of hydropathy-0.641
Instability index72.52
Isoelectric point9.11
Molecular weight107996.16
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01409
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     659.20|      96|      96|     409|     504|       2
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  219-  276 (78.10/23.03)	.............QLQ.ERPMSP...P..SLDSKSSVPPNSSVC..SP..............................................PATGQ....KRPATN.......SP.PHPREAPA...........................FKQPAT....QNNY
  281-  408 (102.86/33.11)	WPSSESPASALSSQ...NQVPSS...IqaPGSGQSPLNYGQGSMpgQPNQ.ALpqrpgiptppashlsslnQPNP...................PNVTItnkgPPTQHTegirpprGHSPVPACGPR...MS...WNQPA.A.......PSSPvSTSPTTsvlaNQLN
  409-  504 (170.06/60.46)	MAPSNMPLRHNNPQLQSNQAVSS...I..VSQSQSTMNQAQSVL..NPNN.AL..................RGNL...................PNIGL....RLTQNT.......SPGPVPAAGPNALTVQ...LNQHQ.S.......FSQN.SQQPQQ....QSAS
  505-  595 (103.04/33.18)	MANS.MP...SSIQTKLGNATSGnqlI..PSQGQ.TITTAPSS.....NM.PL..................QSG....................PGI.M....PMSQGT.......SQQSQPSTNP...TVA...TKDRR.TiwqgileFHEK.SVPPQS....QA..
  751-  830 (102.26/32.87)	LQSTNTP....NQNMMITQPASG............NMNASNSQI..NP.........................RM...................PINQQ....QVAQNT..........PAPAQAPNAGMVHsttMNQQQpS.......LSQA.ARLSQL....EAAR
  873-  974 (102.90/33.13)	MIERQNTIRHLQQQLQHQQ..QQ...L..AQQQQSIQMQQVSQQ..NSHNpQL..................RNLLqqqaqqmrrqqhqmlmqqhPQ.GI....R.PQ.........LPGNIPQGG...IGSS...VGQQQ...........QS.QQQPQQ....QS..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01409 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IRQMYENQRKQQQQKQQRMQQQQLGNVTSSDNIGLQSTNTPNQNMMITQPASGNMNASNSQINPRMPINQQQVAQNTPAPAQAPNAGMVHSTTMNQQQPSLSQAARLSQLEA
2) LQERPMSPPSLDSKSSVPPNSSVCSPPATGQKRPATNSPPHPREAPAFKQPATQNNYSGMDWPSSESPASALSSQNQVPSSIQAPGSGQSPLNYGQGSMPGQPNQALPQRPGIPTPPASHLSSLNQPNPPNVTITNKGPPTQHTEGIRPPRGHSPVPACGPRMSWNQPAAPSSPVSTSPTTSVLANQLNMAPSNMPLRHNNPQLQSNQAVSSIVSQSQSTMNQAQSVLNPNNALRGNLPNIGLRLTQNTSPGPVPAAGPNALTVQLNQHQSFSQNSQQPQQQSASMANSMPSSIQTKLGNATSGNQLIPSQGQTITTAPSSNMPLQSGPGIMPMSQGTSQQSQPSTNPTVATKDRRT
3) QQKELQYKAAQEQQQQQQQQQQQQQMIERQNTIRHLQQQLQH
4) QQSIQMQQVSQQNSHNPQLRNLLQQQAQQMRRQQHQMLMQQHPQGIRPQLPGNIPQGGIGSSVGQQQQSQQQPQQQSWGDSAILDLLPP
717
220
848
898
828
576
889
986










Molecular Recognition Features






MoRF SequenceStartStop




1) SWGDSAILDLLPP
974
986