<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01400

Description Mediator of RNA polymerase II transcription subunit 26 (Fragment)
SequenceMQHSPYEIKEKLLQALDHEYNVVDMASVLEVIAALEKAIITKEALEKTRIGKYINELRKRTNNEQLARRAKELVKSWRKLLPQTPQRVNGEEVINSVSSSSGSMTVLGPGPGPGFGPGPGPGNRMLKTSASVPGTPRYKTSSPSVMGERSSSPYFSSASNSPLLNSSVLQGTNLPMPSNYAPVKFTNFVNKSLLNVSNQSKNMTSSQLFKPISPSAGRQGSNTTSSGTNVLPSRRTCSPNVNLGLRTNSSSSSPLLNTSVNLCSQDVSPPLPCTVAHSTLDIAKTNAANKRLRKMSYSPSPKEVVSNSKSRIGNGMSDVTESILPSESSAFKNVNLFNSKSIEGDKTLIQVVTNLKTPKRKRSFEKNELHENRLGDILASLPSGSKLPKVKTTQQLIADLHAKKGTVLSPNNLTTVDSLHSSEAEVSRTKSELLKKFLIASQSVRNESNEESPTYESNVSVNDYGVHSVSDVSSVINRNSDIPPCISQPDPVDEEINRILSALPPINPDEINLEDNASSPKRPTSVTSDDLNRLSEPWEYVNGVYDCHGTWRPWEECTEQRSYLGESFQILPYVNID
Length577
PositionUnknown
OrganismStegodyphus mimosarum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Araneae> Araneomorphae> Entelegynae> Eresoidea> Eresidae> Stegodyphus.
Aromaticity0.05
Grand average of hydropathy-0.568
Instability index57.47
Isoelectric point8.96
Molecular weight62966.97
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01400
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.11|      42|      54|     151|     204|       1
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   97-  140 (60.64/23.03)	VSSSS..GSMTvlgpgPGPGFGP...GPGPGNRMLK.TS........ASVPG..TP.RYKT
  141-  186 (60.05/30.90)	.SSPSvmGERS.....SSPYFSSasnSPLLNSSVLQGTN........LPMPSNYAP.VKFT
  196-  244 (54.42/33.16)	VSNQS..KNMT.....SSQLF.....KPISPSAGRQGSNttssgtnvLPSRRTCSPnVNLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.12|      27|      55|     301|     328|       2
---------------------------------------------------------------------------
  301-  317 (18.95/ 6.82)	........................................PKEVVSNSKSRIG.NGMS
  318-  375 (20.43/12.83)	DVTESiLPSESsafknvnlfnsksiegdktliqvvtnlktPKRKRSFEKNELHeNRLG
  376-  409 (30.75/16.45)	DILAS.LPSGS......................klpkvktTQQLIADLHAKKG.TVLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.64|      51|      64|     439|     494|       4
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  439-  494 (75.75/51.04)	IASQSVRNESNEESPTYESNVSVNDygVHSVSDVSSVINRNSDippCISQPDPVDE
  506-  556 (94.89/49.51)	INPDEINLEDNASSPKRPTSVTSDD..LNRLSEPWEYVNGVYD...CHGTWRPWEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01400 with Med26 domain of Kingdom Metazoa
Unable to open file!